Commits · master · Andrey Lugovskiy / Taxonomy Tools

13 Mar, 2017 2 commits
- end · fa0c6b78
  Andrey Lugovskiy authored Mar 13, 2017
  
  fa0c6b78
- -Need some adjustments for viewing · bf2e677e
  Andrey Lugovskiy authored Mar 13, 2017
  
  bf2e677e
12 Mar, 2017 1 commit
- -without parse implementation method. it need will do correct. · a4d9039b
  Andrey Lugovskiy authored Mar 12, 2017
  
  a4d9039b
07 Mar, 2017 3 commits
- Added --no-current flag to ignore the bit of code for obsolete names (fixes #22) · 05c4aaf8
  Matija Obreza authored Mar 07, 2017
  
  05c4aaf8
- Fixed bug in mappings when HEADER_SPAUTHOR_CHECK or HEADER_SUBTAUTHOR_CHECK are injected · 9eaf4d18
  Matija Obreza authored Mar 07, 2017
  
  9eaf4d18
- Use Levenshtein and Dice coefficients (fixes #16) · 54f4e71b
  Matija Obreza authored Mar 07, 2017
  
  54f4e71b
10 Oct, 2016 1 commit
- README updated · ffc3fc36
  Matija Obreza authored Oct 10, 2016
  
  ffc3fc36
02 Jun, 2016 3 commits
- Test case for issue #16 · e24e686f
  Matija Obreza authored Jun 02, 2016
  
  e24e686f
- Update .gitlab-ci.yml · e0f0c9d5
  Matija Obreza authored Jun 02, 2016
  
  e0f0c9d5
- Implemented checking for hybrid species (addresses #12) · 6e9c5e56
  Matija Obreza authored Jun 02, 2016
  
  6e9c5e56
01 Jun, 2016 3 commits
- Ignore updated · 31be18d3
  Matija Obreza authored Jun 01, 2016
  
  31be18d3
- Support for hybrid species (Sorghum x almum) (addresses #12) · a5dbf505
  Matija Obreza authored Jun 01, 2016
  
  a5dbf505
- Handle unknowns better (fixes #19) · 642d6ddf
  Matija Obreza authored Jun 01, 2016
  
  642d6ddf
31 May, 2016 1 commit
- Copyright 2016 · 196bd159
  Matija Obreza authored May 31, 2016
  
  196bd159
30 May, 2016 1 commit
- Fixed #18: include speciesId when SUBTEXT is actually blank · 83f039c5
  Matija Obreza authored May 30, 2016
  
  83f039c5
27 May, 2016 5 commits
- FindBugs: DateFormats are not thread safe, string-string comparison · 083ccced
  Matija Obreza authored May 27, 2016
  
  083ccced
- Javadocs · ce99f729
  Matija Obreza authored May 27, 2016
  
  ce99f729
- Added GRINTAX_speciesId and GRINTAX_speciesCurrent columns in output CSV,... · e4fdfe33
  Matija Obreza authored May 27, 2016
```
Added GRINTAX_speciesId and GRINTAX_speciesCurrent columns in output CSV, added current species data for all suggestions
```
  e4fdfe33
- TaxonomyDatabase allows fetching speciesRow and genus by Id, lists speciesRows · f70c06a2
  Matija Obreza authored May 27, 2016
  
  f70c06a2
- Fixed wrong SUBTAUTHOR logic · 11265e63
  Matija Obreza authored May 27, 2016
  
  11265e63
26 May, 2016 5 commits
- Improved internal structures for Most Frequent K Chars · 48701b7b
  Matija Obreza authored May 26, 2016
  
  48701b7b
- Most frequent K characters metric · d51cf97e
  Matija Obreza authored May 26, 2016
  
  d51cf97e
- Decode HTML in selected fields · 2fd38e7f
  Matija Obreza authored May 26, 2016
  
  2fd38e7f
- Parse speciesRow#specificHybrid properly and use × when printing names of hybrids · 7ace7374
  Matija Obreza authored May 26, 2016
  
  7ace7374
- Make it pass tests when databases are not available · 34f25ebc
  Matija Obreza authored May 26, 2016
  
  34f25ebc
25 May, 2016 7 commits
- TaxonomyChecker must return a list containing the match if exact match · 9622ab11
  Matija Obreza authored May 25, 2016
  
  9622ab11
- Fixed parenthesis bug · 846f616b
  Matija Obreza authored May 25, 2016
  
  846f616b
- Added support to specify CSV separator, quote and escape characters (fixes #15) · 2e352f15
  Matija Obreza authored May 25, 2016
  
  2e352f15
- Added #levenshteinCoefficient · abce00d4
  Matija Obreza authored May 25, 2016
  
  abce00d4
- CHECK_PASSED defaults to "OK" instead of null · 9b2eb2ff
  Matija Obreza authored May 25, 2016
  
  9b2eb2ff
- Extracted DatabaseTest for TaxonomyCheckerTest · 507be26c
  Matija Obreza authored May 25, 2016
  
  507be26c
- TaxonomyDatabase#listSpecies · bf1d17f4
  Matija Obreza authored May 25, 2016
  
  bf1d17f4
24 May, 2016 1 commit
- Refuse to run if source CSV contains _check columns (fixes #11) · a04ecafa
  Matija Obreza authored May 24, 2016
  
  a04ecafa
23 May, 2016 7 commits
- Fixed #2: Genus name Qualifier as enum · cb4f854b
  Matija Obreza authored May 23, 2016
  
  cb4f854b
- .gitignore more stuff · 409a9c21
  Matija Obreza authored May 23, 2016
  
  409a9c21
- SUBTAUTHOR_check implemented (fixes #7) · 6ebdf2cf
  Matija Obreza authored May 23, 2016
  
  6ebdf2cf
- Give deprecated records (synonyms) 80% of their score (fixes #9) · 30650fb0
  Matija Obreza authored May 23, 2016
  
  30650fb0
- SUBTAXA check (fixes #7) · a4512040
  Matija Obreza authored May 23, 2016
  
  a4512040
- Logging fix · 73375935
  Matija Obreza authored May 23, 2016
  
  73375935
- similarityScore must be between 0.0 and 1.0 · 945a0569
  Matija Obreza authored May 23, 2016
```
Using Dice's coefficient
```
  945a0569