Uploader issueshttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues2017-10-27T13:27:32+02:00https://gitlab.croptrust.org/genesys-pgr/anno/-/issues/9Release 1.12017-10-27T13:27:32+02:00Matija ObrezaRelease 1.1Release 1.1Release 1.11.1Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/8Release 1.12017-10-05T15:18:03+02:00Matija ObrezaRelease 1.1We have breaking changes coming into the code. Move to new version.We have breaking changes coming into the code. Move to new version.1.1Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/7Settings: Scope2017-10-06T13:31:00+02:00Matija ObrezaSettings: Scope`genesys-api-client:1.1` allows for configurable OAuth `scope` setting.
Add field to Settings dialog and persist it in the `workspace.json` file.`genesys-api-client:1.1` allows for configurable OAuth `scope` setting.
Add field to Settings dialog and persist it in the `workspace.json` file.1.1Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/6Editing JDBC connect string2017-09-25T19:06:11+02:00Matija ObrezaEditing JDBC connect stringWhen trying to edit the JDBC connection URL in the "Add database" dialog the cursor keeps jumping to the start of the text field.
![anno-jdbc](/uploads/c03e812c6a7a57375045764b627a0c21/anno-jdbc.png)
This seems to be a problem only whe...When trying to edit the JDBC connection URL in the "Add database" dialog the cursor keeps jumping to the start of the text field.
![anno-jdbc](/uploads/c03e812c6a7a57375045764b627a0c21/anno-jdbc.png)
This seems to be a problem only when the **Driver** is selected.1.1https://gitlab.croptrust.org/genesys-pgr/anno/-/issues/3DOI support2017-09-25T19:05:57+02:00Matija ObrezaDOI supportIssue genesys-pgr/genesys-server#107 adds DOI support to the Genesys API.
Add "DOI" descriptor to the list of available MCPD descriptors in the uploader tool.
![doi-listed](/uploads/b792eb8001ef67135f800ff77267307e/doi-listed.png)
W...Issue genesys-pgr/genesys-server#107 adds DOI support to the Genesys API.
Add "DOI" descriptor to the list of available MCPD descriptors in the uploader tool.
![doi-listed](/uploads/b792eb8001ef67135f800ff77267307e/doi-listed.png)
When mapped on the column the values are added to the JSON as:
```json
{
"doi": "10.2323/AEW#",
"instCode": ...
}
```
The DOI field only allows a single value and during data validation the could should test that if DOI has a value, it matches the regexp pattern `^10\.[0-9]+/.+`.1.1https://gitlab.croptrust.org/genesys-pgr/anno/-/issues/16Release 1.22018-02-23T16:26:53+01:00Matija ObrezaRelease 1.21.2Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/15Client ID label2018-02-23T14:59:16+01:00Matija ObrezaClient ID labelIn the Settings dialog, rename label **Client API key** to read **Client ID/API key**.In the Settings dialog, rename label **Client API key** to read **Client ID/API key**.1.2Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/14Improved Excel source2018-02-23T14:59:36+01:00Matija ObrezaImproved Excel sourceExcel reader does not handle Excel dates well. Use the `DateUtils.isDate` in POI library (or something like that) and read the `Date` value (`getDateValue()`) of the cell and return the value formatted as **YYYYMMDD**.
This should work ...Excel reader does not handle Excel dates well. Use the `DateUtils.isDate` in POI library (or something like that) and read the `Date` value (`getDateValue()`) of the cell and return the value formatted as **YYYYMMDD**.
This should work for preview and actual sending of data to server.
## Blank cells at start of row
It appears that Excel reader strips out the first cells if they are blank. This should not happen.1.2Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/13Reset mapping button2018-02-22T15:05:57+01:00Matija ObrezaReset mapping buttonWhen a data sheet is open, a "Reset mapping" button should be enabled in the toolbar (next to the Automap).
When clicked, mappings for selected sheet are completely reset.When a data sheet is open, a "Reset mapping" button should be enabled in the toolbar (next to the Automap).
When clicked, mappings for selected sheet are completely reset.1.2Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/12Highlight selected column2018-02-22T11:32:23+01:00Matija ObrezaHighlight selected columnWhen looking at the data sheet and clicking the column header label, the selected column details are displayed in the details view below. The users are getting lost because there is no indication which column is selected.
Update the she...When looking at the data sheet and clicking the column header label, the selected column details are displayed in the details view below. The users are getting lost because there is no indication which column is selected.
Update the sheet viewer so that currently selected column is highlighted as follows:
1. If not mapped (RDF term is blank): Yellow
1. If mapped (RDF term is not blank): Pink
For unselected columns, the background should be:
1. Not mapped: default (as is now)
1. If mapped: Light blue1.2Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/11Initial window size on Windows2018-02-19T09:56:03+01:00Matija ObrezaInitial window size on WindowsOn MS Windows OS all app windows open with strange initial width and height. Please have a look why this happens. I don't know how it behaves on Linux, but it's good on Mac.
![ScreenshotGenesysMagic](/uploads/3bfc08724d1b0f891aa176990ce...On MS Windows OS all app windows open with strange initial width and height. Please have a look why this happens. I don't know how it behaves on Linux, but it's good on Mac.
![ScreenshotGenesysMagic](/uploads/3bfc08724d1b0f891aa176990ce414f0/ScreenshotGenesysMagic.png)
![ScreenshotGenesysMagic2](/uploads/90dccef3e5c6f178c8bc6e4ab320a44c/ScreenshotGenesysMagic2.png)1.2Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/10Update documentation2017-12-18T19:46:25+01:00Matija ObrezaUpdate documentationUpdate documentationUpdate documentation1.2Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/41Clean strings2023-12-06T05:28:19+01:00Matija ObrezaClean stringsString data sometimes contains double spaces, tabs and end-of-line (`\r`, `\n`, `\f`) characters. These should be cleaned up and trimmed to `null` when preparing JSON for upload. The fix will be something along the lines of `str = String...String data sometimes contains double spaces, tabs and end-of-line (`\r`, `\n`, `\f`) characters. These should be cleaned up and trimmed to `null` when preparing JSON for upload. The fix will be something along the lines of `str = StringUtils.trimToNull(str.replace(/\s+/g, " "))`.Artem HrybeniukArtem Hrybeniukhttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/40Add CURATION2023-08-07T10:09:58+02:00Matija ObrezaAdd CURATIONGenesys add support for `curationType` in genesys-pgr/genesys-server!793. Add `CURATION` to the Uploader. If possible use the set of values we support. The column should be listed after `ACCENUMB`.Genesys add support for `curationType` in genesys-pgr/genesys-server!793. Add `CURATION` to the Uploader. If possible use the set of values we support. The column should be listed after `ACCENUMB`.Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/39Sanity checks2023-06-12T11:23:39+02:00Matija ObrezaSanity checksTest that accession numbers are unique in the file. How this works depends on the `uniqueAcceNumbs` of the institute setting in Genesys.Test that accession numbers are unique in the file. How this works depends on the `uniqueAcceNumbs` of the institute setting in Genesys.Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/38User trying to connect to Genesys FTP server bug2022-12-27T09:40:25+01:00Christelle RabilUser trying to connect to Genesys FTP server bugOne of the users is encountering an issue trying to connect to Genesys FTP server in order to upload images before the end of this month for reporting purposes. She provided the screenshot below:
![image_1_](/uploads/9fd70d32976f5580c95...One of the users is encountering an issue trying to connect to Genesys FTP server in order to upload images before the end of this month for reporting purposes. She provided the screenshot below:
![image_1_](/uploads/9fd70d32976f5580c95dbc987a432342/image_1_.png)
She already configured and generated the FTP password from her Profile in Genesys.Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/37API v12021-04-22T08:28:24+02:00Matija ObrezaAPI v1Anno default settings still use */api/v0* as API server base URL.
![image](https://gitlab.croptrust.org/genesys-pgr/genesys-server/uploads/3a1eb4c1bb6189a359d22a843d01b1c8/image.png)
The JSON generated by Anno is API v1.Anno default settings still use */api/v0* as API server base URL.
![image](https://gitlab.croptrust.org/genesys-pgr/genesys-server/uploads/3a1eb4c1bb6189a359d22a843d01b1c8/image.png)
The JSON generated by Anno is API v1.3.0Maxym BorodenkoMaxym Borodenkohttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/36Document file management with FTP2021-02-15T09:51:38+01:00Matija ObrezaDocument file management with FTPAdd **asciidoc** on managing files with FTP.Add **asciidoc** on managing files with FTP.Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/35J11: BG Colors2021-10-04T11:20:50+02:00Matija ObrezaJ11: BG ColorsOn Win10, the background colors get messed up.
![image](/uploads/9e04f7668716b52634418593315925fb/image.png)
Also the highlights:
![image](/uploads/8b97952025fdb814cb548e2d428b4dff/image.png)
![image](/uploads/130e20a95271eaf8fc49b03...On Win10, the background colors get messed up.
![image](/uploads/9e04f7668716b52634418593315925fb/image.png)
Also the highlights:
![image](/uploads/8b97952025fdb814cb548e2d428b4dff/image.png)
![image](/uploads/130e20a95271eaf8fc49b0396c62e08a/image.png)
## Remove custom highlighting
Can we change the Column header background colors instead of this:
![image](/uploads/b0d096d88ddcda7b62cfd0bd978e6531/image.png)3.0Matija ObrezaMatija Obrezahttps://gitlab.croptrust.org/genesys-pgr/anno/-/issues/34MCPD descriptor list2023-08-04T12:04:52+02:00Matija ObrezaMCPD descriptor listIt would be really great if the list of descriptors (right) could be sorted (by both columns) and if the mapped descriptors were highlighted.It would be really great if the list of descriptors (right) could be sorted (by both columns) and if the mapped descriptors were highlighted.3.0Matija ObrezaMatija Obreza