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Java Client API
Commit 21cde930 authored by Matija Obreza's avatar Matija Obreza
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Merge branch '5-logging' into 'master' 

Logging

Closes #5

See merge request !5
parents e568b535 4aeb3013
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    pom.xml
    View file @ 21cde930
    ......@@ -40,6 +40,7 @@
    <maven-gpg-plugin.version>1.5</maven-gpg-plugin.version>
    <nexus-staging-maven-plugin.version>1.6.8</nexus-staging-maven-plugin.version>
    <slf4j.version>1.7.21</slf4j.version>
    <show.deprecations>true</show.deprecations>
    </properties>
    ......@@ -92,11 +93,11 @@
    <artifactId>scribejava-core</artifactId>
    <version>4.2.0</version>
    </dependency>
    <dependency>
    <groupId>log4j</groupId>
    <artifactId>log4j</artifactId>
    <version>1.2.17</version>
    </dependency>
    <dependency>
    <groupId>org.slf4j</groupId>
    <artifactId>jcl-over-slf4j</artifactId>
    <version>${slf4j.version}</version>
    </dependency>
    <dependency>
    <groupId>commons-lang</groupId>
    <artifactId>commons-lang</artifactId>
    ......
    src/main/java/org/genesys2/client/oauth/CLI.java
    View file @ 21cde930
    ......@@ -41,8 +41,8 @@ import com.github.scribejava.core.model.Verb;
    import org.apache.commons.io.IOUtils;
    import org.apache.commons.lang.StringUtils;
    import org.apache.log4j.LogManager;
    import org.apache.log4j.Logger;
    import org.slf4j.Logger;
    import org.slf4j.LoggerFactory;
    /**
    * Simple command line interface to Genesys.
    ......@@ -51,8 +51,8 @@ import org.apache.log4j.Logger;
    */
    public class CLI {
    /** The Constant _log. */
    private static final Logger _log = LogManager.getLogger(CLI.class);
    /** The Constant LOG. */
    private static final Logger LOG = LoggerFactory.getLogger(CLI.class);
    /** The properties file. */
    private File propertiesFile;
    ......@@ -88,7 +88,7 @@ public class CLI {
    * @param args the arguments
    */
    public static void main(final String[] args) {
    _log.info("Hello World!");
    LOG.info("Hello World!");
    final CLI cli = new CLI();
    cli.genesysClient = GenesysClient.build(cli.loadProperties("client.properties"));
    ......@@ -108,22 +108,22 @@ public class CLI {
    saveProperties();
    } catch (final OAuthAuthenticationException e) {
    _log.error("Failed to fetch /me", e);
    LOG.error("Failed to fetch /me", e);
    try {
    authenticate();
    } catch (OAuthAuthenticationException e1) {
    _log.error("Failed to authenticate", e1);
    LOG.error("Failed to authenticate", e1);
    return;
    }
    } catch (final Throwable e) {
    _log.error(e.getMessage(), e);
    LOG.error(e.getMessage(), e);
    return;
    }
    try {
    doWork();
    } catch (final Throwable e) {
    _log.error(e.getMessage(), e);
    LOG.error(e.getMessage(), e);
    }
    }
    ......@@ -555,7 +555,7 @@ public class CLI {
    if (restart) {
    saveProperties();
    _log.warn("Properties udpated, please restart CLI application");
    LOG.warn("Properties udpated, please restart CLI application");
    System.exit(-1);
    }
    }
    ......@@ -592,7 +592,7 @@ public class CLI {
    fis = new FileOutputStream(propertiesFile);
    properties.store(fis, "OAuth client properties");
    } catch (final IOException e) {
    _log.error(e);
    LOG.error(e.getMessage(), e);
    } finally {
    IOUtils.closeQuietly(fis);
    }
    ......@@ -612,15 +612,15 @@ public class CLI {
    FileInputStream fis = null;
    try {
    _log.info("Loading " + propertiesFile.getAbsolutePath());
    LOG.info("Loading {}", propertiesFile.getAbsolutePath());
    fis = new FileInputStream(propertiesFile);
    properties.load(fis);
    // Keep properties
    this.properties = properties;
    } catch (final FileNotFoundException e) {
    _log.warn(e, e);
    LOG.warn(e.getMessage(), e);
    } catch (final IOException e) {
    _log.error(e, e);
    LOG.error(e.getMessage(), e);
    } finally {
    IOUtils.closeQuietly(fis);
    }
    ......
    src/main/java/org/genesys2/client/oauth/GenesysClient.java
    View file @ 21cde930
    ......@@ -50,19 +50,19 @@ import com.github.scribejava.core.oauth.OAuth20Service;
    import org.apache.commons.io.FileUtils;
    import org.apache.commons.lang.StringUtils;
    import org.apache.log4j.LogManager;
    import org.apache.log4j.Logger;
    import org.genesys2.client.oauth.api.GenesysApi;
    import org.genesys2.client.oauth.api.accession.AccessionJson;
    import org.genesys2.client.oauth.api.images.RepositoryImage;
    import org.slf4j.Logger;
    import org.slf4j.LoggerFactory;
    /**
    * Genesys API client using Scribe.
    */
    public class GenesysClient {
    /** The Constant _log. */
    private static final Logger _log = LogManager.getLogger(GenesysClient.class);
    /** The Constant LOG. */
    private static final Logger LOG = LoggerFactory.getLogger(GenesysClient.class);
    /** The mapper. */
    private static ObjectMapper objectMapper;
    ......@@ -215,8 +215,8 @@ public class GenesysClient {
    }
    }
    if (_log.isDebugEnabled()) {
    _log.debug(method + " " + request.getCompleteUrl());
    if (LOG.isDebugEnabled()) {
    LOG.debug("{} {}", method, request.getCompleteUrl());
    }
    if (StringUtils.isNotBlank(contentType)) {
    ......@@ -225,8 +225,8 @@ public class GenesysClient {
    if (postBody != null) {
    // System.err.println("Adding data: " + data);
    if (_log.isTraceEnabled()) {
    _log.trace("Body: " + new String(postBody));
    if (LOG.isTraceEnabled()) {
    LOG.trace("Body: {}", new String(postBody));
    }
    request.setPayload(postBody);
    }
    ......@@ -240,18 +240,18 @@ public class GenesysClient {
    final String responseBody = response.getBody();
    _log.debug("HTTP status code " + response.getCode());
    LOG.debug("HTTP status code {}", response.getCode());
    if (response.getCode() >= 200 && response.getCode() < 300) {
    _log.debug("Returning response body");
    LOG.debug("Returning response body");
    return responseBody;
    } else {
    if (response.getCode() == 301 || response.getCode() == 302) {
    _log.debug("Redirect: " + response.getHeader(HttpConstants.LOCATION));
    LOG.debug("Redirect: {}", response.getHeader(HttpConstants.LOCATION));
    throw new HttpRedirectException(response.getHeader(HttpConstants.LOCATION));
    }
    if (response.getCode() == 401) {
    _log.warn("Response error: " + response.getCode());
    LOG.warn("Response error: {}", response.getCode());
    System.err.println(responseBody);
    if (i == 0) {
    refreshAccessToken();
    ......@@ -259,10 +259,10 @@ public class GenesysClient {
    throw new OAuthAuthenticationException("Unauthorized");
    }
    } else {
    _log.error(method + " " + request.getCompleteUrl());
    _log.error(new String(postBody));
    _log.error("HTTP response code: " + response.getCode());
    _log.error("Response: " + responseBody);
    LOG.error("{} {}", method, request.getCompleteUrl());
    LOG.error(new String(postBody));
    LOG.error("HTTP response code: {}", response.getCode());
    LOG.error("Response: {}", responseBody);
    if (responseBody.contains("Deadlock found when trying to get lock; try restarting transaction")
    || responseBody.contains("nested exception is org.hibernate.exception.LockAcquisitionException: could not execute statement")
    || responseBody.contains("nested exception is org.hibernate.exception.LockTimeoutException: could not execute statement")) {
    ......@@ -298,14 +298,14 @@ public class GenesysClient {
    */
    public void refreshAccessToken() throws GenesysApiException {
    if (tokens.hasRefreshToken()) {
    _log.info("Using Refresh Token to get new access token");
    LOG.info("Using Refresh Token to get new access token");
    try {
    OAuth2AccessToken accessToken = service.refreshAccessToken(tokens.getRefreshToken());
    tokens.setAccessToken(accessToken.getAccessToken());
    _log.info("Got new Access Token!");
    LOG.info("Got new Access Token!");
    } catch (Throwable e) {
    _log.info("Refresh token didn't work: " + e.getMessage());
    LOG.info("Refresh token didn't work: {}", e.getMessage());
    throw new OAuthAuthenticationException("Refresh token not valid, please re-authenticate");
    }
    } else {
    ......@@ -370,7 +370,7 @@ public class GenesysClient {
    return null;
    }
    _log.debug("Sending: " + accns);
    LOG.debug("Sending: {}", accns);
    return query(Verb.PUT, "/acn/" + instCode + "/update", null, objectMapper.writeValueAsString(accns));
    }
    ......@@ -394,7 +394,7 @@ public class GenesysClient {
    return query(Verb.PUT, "/acn/" + instCode + "/upsert", null, jsonAccessionList);
    } catch (final PleaseRetryException e) {
    final long sleepTime = (long) (Math.pow(2, retry) * 100 + Math.pow(2, retry) * 2500 * Math.random());
    _log.warn("Retrying PUT after " + sleepTime + " ms.");
    LOG.warn("Retrying PUT after {} ms.", sleepTime);
    Thread.sleep(sleepTime);
    }
    }
    ......@@ -424,10 +424,10 @@ public class GenesysClient {
    return query(Verb.PUT, "/acn/" + instCode + "/upsert", null, data);
    } catch (final PleaseRetryException e) {
    final long sleepTime = (long) (Math.pow(2, retry) * 100 + Math.pow(2, retry) * 2500 * Math.random());
    _log.warn("Retrying PUT after " + sleepTime + " ms.");
    LOG.warn("Retrying PUT after {} ms.", sleepTime);
    Thread.sleep(sleepTime);
    } catch (final GenesysApiException e) {
    _log.error("Failed to upload data: " + data);
    LOG.error("Failed to upload data: {}", data);
    throw e;
    }
    }
    ......@@ -443,11 +443,11 @@ public class GenesysClient {
    * @throws GenesysApiException the genesys api exception
    */
    public String updateOrganizationMembers(final String organizationSlug, final ArrayNode institutes) throws GenesysApiException {
    _log.debug("Sending: " + institutes);
    LOG.debug("Sending: {}", institutes);
    try {
    return query(Verb.PUT, "/org/" + organizationSlug + "/set-institutes", null, institutes.toString());
    } catch (final PleaseRetryException e) {
    _log.warn("Retrying PUT after some time...");
    LOG.warn("Retrying PUT after some time...");
    try {
    Thread.sleep((long) (1000 * Math.random()));
    } catch (final InterruptedException e1) {
    ......@@ -466,17 +466,17 @@ public class GenesysClient {
    * @throws GenesysApiException the genesys api exception
    */
    public String updateAccessionNames(final String instCode, final Collection<ObjectNode> batch) throws GenesysApiException {
    _log.debug("Sending: " + batch);
    LOG.debug("Sending: {}", batch);
    try {
    return query(Verb.PUT, "/acn/" + instCode + "/names", null, batch.toString());
    } catch (final PleaseRetryException e) {
    _log.warn("Retrying PUT after some time...");
    LOG.warn("Retrying PUT after some time...");
    try {
    Thread.sleep((long) (1000 * Math.random()));
    } catch (final InterruptedException e1) {
    e1.printStackTrace();
    }
    _log.warn("Retrying PUT");
    LOG.warn("Retrying PUT");
    return query(Verb.PUT, "/acn/" + instCode + "/names", null, batch.toString());
    }
    }
    ......@@ -550,16 +550,16 @@ public class GenesysClient {
    try {
    OAuth2AccessToken accessToken = service.getAccessToken(verifierCode);
    _log.info("ACCESS TOKEN: " + accessToken.getAccessToken() + " scope=" + accessToken.getScope() + " raw=" + accessToken.getRawResponse());
    LOG.info("ACCESS TOKEN: {} scope={} raw={}", accessToken.getAccessToken(), accessToken.getScope(), accessToken.getRawResponse());
    final String refreshToken = accessToken.getRefreshToken();
    _log.info("REFRESH TOKEN: " + refreshToken);
    LOG.info("REFRESH TOKEN: {}", refreshToken);
    tokens.setAccessToken(accessToken.getAccessToken());
    tokens.setRefreshToken(refreshToken);
    } catch (IOException | InterruptedException | ExecutionException e) {
    _log.error("Auth error", e);
    LOG.error("Auth error", e);
    throw new OAuthAuthenticationException(e.getMessage());
    }
    }
    ......@@ -1046,7 +1046,7 @@ public class GenesysClient {
    throw new GenesysApiException("Content-Type must be provided for the file " + file.getAbsolutePath());
    }
    _log.debug("Image content type: " + contentType);
    LOG.debug("Image content type: {}", contentType);
    // PUT file on server
    final String json = query(Verb.PUT, String.format("/img/%1$s/acn/%2$s/", instCode, acceNumb), Collections.singletonMap("originalFilename", file.getName()), contentType,
    ......
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