details.jsp 27.5 KB
Newer Older
Matija Obreza's avatar
Matija Obreza committed
1
2
3
4
5
6
<!DOCTYPE html>

<%@include file="/WEB-INF/jsp/init.jsp"%>

<html>
<head>
Matija Obreza's avatar
Matija Obreza committed
7
8
9
<title><spring:message code="accession.page.profile.title" arguments="${accession.accessionName}"
    argumentSeparator="|"
  /></title>
Matija Obreza's avatar
Matija Obreza committed
10
</head>
11
<body typeof="germplasm:GermplasmAccession">
Matija Obreza's avatar
Matija Obreza committed
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
  <h1>
    <span property="dwc:catalogNumber"><c:out value="${accession.accessionName}" /></span> <small
      property="dwc:institutionCode" datatype="germplasmType:wiewsInstituteID"
    ><c:out value="${accession.instituteCode}" /></small>
  </h1>

  <div class="main-col-header acn">
    <div class="sel" x-aid="${accession.id}">
      <a class="add" href=""><spring:message code="selection.add" arguments="${accession.accessionName}" /></a> <a
        class="remove" href=""
      ><spring:message code="selection.remove" arguments="${accession.accessionName}" /></a>
    </div>
  </div>

  <c:if test="${accession.historic eq true or accession.getClass().simpleName eq 'AccessionHistoric'}">
    <div class="alert alert-warning">
      <spring:message code="accession.this-is-a-historic-entry" />
    </div>
  </c:if>


  <c:if test="${accession.inTrust eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.inTrust.true" />
    </div>
  </c:if>

  <c:if test="${accession.inSvalbard eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.inSvalbard.true" />
    </div>
  </c:if>

  <c:if test="${accession.mlsStatus eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.mlsStatus.true" />
    </div>
  </c:if>

  <%--
52
	<c:if test="${accession.availability eq false}">
Matija Obreza's avatar
Matija Obreza committed
53
54
55
56
		<div class="alert alert-warning">
			<spring:message code="accession.not-available-for-distribution" />
		</div>
	</c:if>
Matija Obreza's avatar
Matija Obreza committed
57
58
59
60
61
62
	
	<c:if test="${accession.availability eq true}">
		<div class="alert alert-info">
			<spring:message code="accession.available-for-distribution" />
		</div>
	</c:if>
Matija Obreza's avatar
Matija Obreza committed
63
64
--%>
  <%--
Matija Obreza's avatar
Matija Obreza committed
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
<div itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
	<a href="<c:url value="/wiews/${accession.institute.code}" />" itemprop="url">
	<span itemprop="title" dir="ltr">${accession.institute.fullName}</span>
	</a> ›
	<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
		<a href="<c:url value="/wiews/${accession.institute.code}/data" />" itemprop="url">
		<span itemprop="title" dir="ltr">Accessions</span>
		</a> ›
		<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
			<a title="<spring:message code="accession.taxonomy-at-institute" arguments="${accession.taxonomy.genus}|||${accession.institute.code}" argumentSeparator="|||" />" href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}" />" itemprop="url">
			<span itemprop="title" dir="ltr">${accession.taxonomy.genus}</span>
			</a> ›
			<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
				<a title="<spring:message code="accession.taxonomy-at-institute" arguments="${accession.taxonomy.genus} ${accession.taxonomy.species}|||${accession.institute.code}" argumentSeparator="|||" />" href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />" itemprop="url">
				<span itemprop="title" dir="ltr">${accession.taxonomy.genus} ${accession.taxonomy.species}</span>
				</a>
			</span>
		</span>
	</span>
</div>
--%>
Matija Obreza's avatar
Matija Obreza committed
86

Matija Obreza's avatar
Matija Obreza committed
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
  <div class="pseudo-right-col col-md-3">
    <c:if test="${accessionGeo.latitude ne null and accessionGeo.longitude ne null}">

      <div class="crop-location" itemscope itemtype="http://schema.org/GeoCoordinates">
        <h3>
          <spring:message code="accession.collecting.site" />
        </h3>
        <div id="map" class="map-container"></div>

        <table class="map-data">
          <tr>
            <td><spring:message code="filter.geo.latitude" />:</td>
            <td><c:out value="${accessionGeo.latitude}" /></td>
          </tr>
          <tr>
            <td><spring:message code="filter.geo.longitude" />:</td>
            <td><c:out value="${accessionGeo.longitude}" /></td>
          </tr>
          <tr>
            <td><spring:message code="accession.elevation" />:</td>
            <td><c:out value="${accessionGeo.elevation}" /></td>
          </tr>
        </table>
      </div>
    </c:if>
  </div>

  <div class="crop-details">
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.holdingInstitute" />
      </div>
      <div class="col-xs-8">
        <a property="dwc:institutionCode" href="<c:url value="/wiews/${accession.instituteCode}" />"> <c:out
            value="${accession.institute.fullName}"
          />
        </a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.holdingCountry" />
      </div>
      <div class="col-xs-8">
        <a href="<c:url value="/geo/${accession.institute.country.code3}" />"><c:out
            value="${accession.institute.country.getName(pageContext.response.locale)}"
          /></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.accessionName" />
      </div>
      <div class="col-xs-8">
        <c:out value="${accession.accessionName}" />
      </div>
    </div>

    <c:if test="${crops ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.crop" />
        </div>
        <div class="col-xs-8">
          <c:forEach items="${crops}" var="crop">
            <a href="<c:url value="/c/${crop.shortName}" />"><c:out
                value="${crop.getName(pageContext.response.locale)}"
              /></a>
          </c:forEach>
        </div>
      </div>
    </c:if>

    <c:if test="${accession.countryOfOrigin ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.origin" />
        </div>
        <div class="col-xs-8">
          <img src="<c:url value="${cdnFlagsUrl}" />/${accession.origin.toUpperCase()}.png" /> <a
            href="<c:url value="/geo/${accession.origin}" />"
          > <c:out value="${accession.countryOfOrigin.getName(pageContext.response.locale)}" />
          </a>
        </div>
      </div>
    </c:if>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.genus" />
      </div>
      <div class="col-xs-8" property="dwc:genus">
        <a href="<c:url value="/acn/t/${accession.taxonomy.genus}" />"><span dir="ltr" class="sci-name"><c:out
              value="${accession.taxonomy.genus}"
            /></span></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.species" />
      </div>
      <div class="col-xs-8">
        <a href="<c:url value="/acn/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />"><span
          class="sci-name" dir="ltr"
        ><c:out value="${accession.taxonomy.genus} ${accession.taxonomy.species}" /></span></a> <br /> <a
          href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />"
        ><spring:message code="accession.taxonomy-at-institute"
            arguments="${accession.taxonomy.genus} ${accession.taxonomy.species}|||${accession.institute.code}"
            argumentSeparator="|||"
          /></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.taxonName" />
      </div>
      <div class="col-xs-8">
        <span dir="ltr" class="sci-name"><c:out value="${accession.taxonomy.taxonName}" /></span>
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.sampleStatus" />
      </div>
      <div class="col-xs-8" property="germplasm:biologicalStatus">
        <spring:message code="accession.sampleStatus.${accession.sampleStatus}" />
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.storage" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accession.stoRage}" var="storage">
          <div>
            <spring:message code="accession.storage.${storage}" />
          </div>
        </c:forEach>
      </div>
    </div>

230
231
232
233
234
235
236
237
238
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.acqDate" />
      </div>
      <div class="col-xs-8">
        <c:out value="${accession.acquisitionDate}" />
      </div>
    </div>

Matija Obreza's avatar
Matija Obreza committed
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.availability" />
      </div>
      <div class="col-xs-8">
        <spring:message code="accession.availability.${accession.availability}" />
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.otherNames" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accessionAliases}" var="accessionAlias">
          <div>
            <c:out value="${accessionAlias.name}" />
            <c:if test="${accessionAlias.instCode != ''}">
              <a href="<c:url value="/wiews/${accessionAlias.instCode}" />"> ${accessionAlias.instCode} </a>
            </c:if>
            <c:if test="${accessionAlias.usedBy != ''}">
260
261
							${accessionAlias.usedBy}
						</c:if>
Matija Obreza's avatar
Matija Obreza committed
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
            <c:if test="${accessionAlias.lang != ''}">
              <c:out value="${accessionAlias.lang}" />
            </c:if>
            <spring:message code="accession.aliasType.${accessionAlias.aliasType}" />
          </div>
        </c:forEach>
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.duplSite" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accession.duplSite.split('[;,]')}" var="duplSite">
          <div>
            <spring:message code="${duplSite}" />
          </div>
        </c:forEach>
      </div>
    </div>


    <c:if test="${accessionExchange ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.donor.institute" />
        </div>
        <div class="col-xs-8">
          <c:if test="${accessionExchange.donorInstitute eq null}">
292
293
						${accessionExchange.donorName}
						</c:if>
Matija Obreza's avatar
Matija Obreza committed
294
295
296
297
298
299
300
301
302
303
          ${accessionExchange.donorInstitute}
        </div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.donor.accessionNumber" />
        </div>
        <div class="col-xs-8">${accessionExchange.accNumbDonor}</div>
      </div>
    </c:if>
Matija Obreza's avatar
Matija Obreza committed
304

Matija Obreza's avatar
Matija Obreza committed
305
    <c:if test="${accession.uuid ne null}">
Matija Obreza's avatar
Matija Obreza committed
306
307
308
      <div class="row text-muted">
        <div class="col-xs-4">
          <spring:message code="accession.uuid" />
Matija Obreza's avatar
Matija Obreza committed
309
        </div>
Matija Obreza's avatar
Matija Obreza committed
310
311
        <div class="col-xs-8">
          <span property="dc:identifier">urn:uuid:<c:out value="${accession.uuid}" /></span>
Matija Obreza's avatar
Matija Obreza committed
312
        </div>
Matija Obreza's avatar
Matija Obreza committed
313
314
315
316
317
318
319
320
321
322
323
324
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.purl" />
        </div>
        <div class="col-xs-8">
          <span property="dc:identifier"><a href="https://purl.org/germplasm/id/${accession.uuid}"><c:out
                value="https://purl.org/germplasm/id/${accession.uuid}"
              /></a></span>
        </div>
      </div>
    </c:if>
Matija Obreza's avatar
Matija Obreza committed
325

326
327
328
329
330
331
332
333
334
335
336
337

    <c:if test="${accession.acceUrl ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.acceUrl" />
        </div>
        <div class="col-xs-8">
          <a target="_blank" href="<c:out value="${accession.acceUrl}"  />"><c:out value="${accession.acceUrl}" /></a>
        </div>
      </div>
    </c:if>

Matija Obreza's avatar
Matija Obreza committed
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
    <c:if test="${accessionCollect ne null}">
      <h4>
        <spring:message code="accession.collecting" />
      </h4>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.institute" />
        </div>
        <div class="col-xs-8">${accessionCollect.collCode}</div>
      </div>
      <c:if test="${accessionCollect.collName ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.collecting.institute" />
          </div>
          <div class="col-xs-8">${accessionCollect.collName}${accessionCollect.collInstAddress}</div>
        </div>
      </c:if>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.mission" />
        </div>
        <div class="col-xs-8">
          <c:out value="${accessionCollect.collMissId}" />
        </div>
        <%--				<div class="col-xs-8"><a href="<c:url value="/collectingmission"><c:param name="collMissId" value="${accessionCollect.collMissId}" /></c:url>"><c:out value="${accessionCollect.collMissId}" /></a></div> --%>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.date" />
        </div>
        <div class="col-xs-8">${accessionCollect.collDate}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.number" />
        </div>
        <div class="col-xs-8">${accessionCollect.collNumb}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.site" />
        </div>
        <div class="col-xs-8">${accessionCollect.collSite}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.source" />
        </div>
        <div class="col-xs-8">
          <spring:message code="accession.collectingSource.${accessionCollect.collSrc}" />
        </div>
      </div>
    </c:if>

    <c:if test="${accessionBreeding ne null}">
      <h4>
        <spring:message code="accession.breeding" />
      </h4>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.breederCode" />
        </div>
        <div class="col-xs-8">${accessionBreeding.breederCode}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.pedigree" />
        </div>
        <div class="col-xs-8">${accessionBreeding.pedigree}</div>
      </div>
    </c:if>


    <c:if test="${accessionGeo ne null}">
      <h4>
        <spring:message code="accession.geo" />
      </h4>

      <c:if test="${accessionCollect.collSite ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.collecting.site" />
          </div>
          <div class="col-xs-8">${accessionCollect.collSite}</div>
        </div>
      </c:if>
      <c:if test="${accessionGeo.latitude ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.geolocation" />
          </div>
          <div class="col-xs-8">${accessionGeo.latitude},${accessionGeo.longitude}</div>
        </div>
      </c:if>
      <c:if test="${accessionGeo.elevation ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.elevation" />
          </div>
          <div class="col-xs-8">${accessionGeo.elevation}<span class="uom">m</span>
          </div>
        </div>
      </c:if>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.geo.datum" />
        </div>
        <div class="col-xs-8">${accessionGeo.datum}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.geo.method" />
        </div>
        <div class="col-xs-8">${accessionGeo.method}</div>
      </div>
      <c:if test="${accessionGeo.uncertainty ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.geo.uncertainty" />
          </div>
          <div class="col-xs-8">${accessionGeo.uncertainty}<span class="uom">m</span>
          </div>
        </div>
      </c:if>
    </c:if>

    <security:authorize access="isAuthenticated()">
      <!-- WorldClim.org -->
      <c:if test="${worldclimJson ne null}">
        <h4>
          <spring:message code="worldclim.monthly.title" />
        </h4>

        <!-- Charts -->
        <div class="row">
          <div class="col-xs-12 col-sm-6">
            <h5>
              <spring:message code="worldclim.monthly.temperatures.title" />
            </h5>
            <div id="temperatureChart" style="height: 150px;"></div>
          </div>
          <div class="col-xs-12 col-sm-6">
            <h5>
              <spring:message code="worldclim.monthly.precipitation.title" />
            </h5>
            <div id="precipitationChart" style="height: 150px;"></div>
          </div>
        </div>

        <!-- Data -->
        <div class="row">
          <div class="col-sm-offset-4 col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <strong><c:out value="${jspHelper.monthShortNames(pageContext.response.locale)[i]}" /></strong>
497
                </div>
Matija Obreza's avatar
Matija Obreza committed
498
499
500
501
502
503
504
505
506
507
508
509
510
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMin" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMin[i]}" />
511
                </div>
Matija Obreza's avatar
Matija Obreza committed
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMean" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMean[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMax" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMax[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.precipitation" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.precipitation[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
Matija Obreza's avatar
Matija Obreza committed
558

Matija Obreza's avatar
Matija Obreza committed
559
        <%-- Needs work 
Matija Obreza's avatar
Matija Obreza committed
560
561
562
563
564
565
566
				<h4><spring:message code="worldclim.other-climate" /></h4>
				<c:forEach items="${worldclimJson.other.keySet()}" var="worldclimDescriptor">
				<div class="row">
					<div class="col-xs-4"><c:out value="${worldclimDescriptor.title}" /></div>
					<div class="col-xs-8"><fmt:formatNumber value="${worldclimJson.other[worldclimDescriptor]}" /><span class="uom">${worldclimDescriptor.uom}</span></div>
				</div>
				</c:forEach>
Matija Obreza's avatar
Matija Obreza committed
567
				--%>
Matija Obreza's avatar
Matija Obreza committed
568
569
570
571
572
573
574
575
      </c:if>
    </security:authorize>

    <c:if test="${svalbardData ne null}">
      <h4>
        <spring:message code="accession.svalbard-data" />
      </h4>

576
577
578
579
580
581
582
583
584
585
586
587
588
      <c:if test="${svalbardData.unitId ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.svalbard-data.url" />
          </div>
          <div class="col-xs-8">
            <a target="_blank" title="<spring:message code="accession.svalbard-data.url-title" />"
              href="http://nordgen.org/sgsv/index.php?app=data_unit&unit=sgsv&unit_id=${svalbardData.unitId}"
            ><spring:message code="accession.svalbard-data.url-text" arguments="${accession.accessionName}" /></a>
          </div>
        </div>
      </c:if>

Matija Obreza's avatar
Matija Obreza committed
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.taxonomy" />
        </div>
        <div class="col-xs-8">${svalbardData.taxonomy}</div>
      </div>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.depositDate" />
        </div>
        <div class="col-xs-8">${svalbardData.depositDate}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.boxNumber" />
        </div>
        <div class="col-xs-8">${svalbardData.boxNumber}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.quantity" />
        </div>
        <div class="col-xs-8">${svalbardData.quantity}</div>
      </div>

615
616
617
618
619
620
621
622
623
624
      <c:if test="${svalbardData.acceUrl ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.acceUrl" />
          </div>
          <div class="col-xs-8">
            <a href="<c:out value="${svalbardData.acceUrl}" />"><c:out value="${svalbardData.acceUrl}" /></a>
          </div>
        </div>
      </c:if>
Matija Obreza's avatar
Matija Obreza committed
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
    </c:if>


    <c:if test="${fn:length(accessionRemarks) gt 0}">
      <h4>
        <spring:message code="accession.remarks" />
      </h4>
    </c:if>
    <c:forEach items="${accessionRemarks}" var="accessionRemark">
      <div class="row">
        <div class="col-xs-4">
          <c:out value="${accessionRemark.fieldName}" />
        </div>
        <div class="col-xs-8">
          <c:out value="${accessionRemark.remark}" />
        </div>
      </div>
    </c:forEach>
  </div>


Matija Obreza's avatar
Matija Obreza committed
646
647
  <security:authorize access="isAuthenticated()">
    <c:if test="${pdci ne null}">
648
649
650
651
652
653
654
655
656
657
      <div class="crop-details">

        <h4>
          <spring:message code="accession.pdci" />
        </h4>
        <div class="jumbotron pdci-score">
          <div>
            <h3>
              <spring:message code="accession.pdci.jumbo" arguments="${pdci.score}" />
            </h3>
658
            <small> <c:if test="${institutePDCI ne null and institutePDCI.count > 0}">
659
660
661
662
663
664
665
666
667
668
                <spring:message code="accession.pdci.institute-avg" arguments="${institutePDCI.avg}" />
              </c:if> <a href="<c:url value="/content/passport-data-completeness-index" />"><spring:message
                  code="accession.pdci.about-link"
                /></a></small>
          </div>
        </div>

        <local:pdci value="${pdci}" />

      </div>
Matija Obreza's avatar
Matija Obreza committed
669
670
671
672
    </c:if>
  </security:authorize>


Matija Obreza's avatar
Matija Obreza committed
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
  <c:if test="${methods.size() gt 0}">

    <div class="crop-details">
      <h4>
        <spring:message code="accession.methods" />
      </h4>
      <c:forEach items="${methods}" var="method" varStatus="status">
        <div class="row targeted" id="method${method.id}">
          <div class="col-xs-6 col-sm-4">
            <c:out value="${method.parameter.title}" />
          </div>
          <div class="col-xs-6 col-sm-4">
            <c:forEach items="${methodValues[method.id]}" var="val">
              <div>
                <c:out value="${method.decode(val.value)}" />
                <span class="uom"><c:out value="${method.unit}" /></span> <sup><a
                  href="#metadata-${val.experimentId}"
                ><c:out value="${val.experimentId}" /></a></sup>
              </div>
            </c:forEach>
          </div>
          <div class="col-xs-12 col-sm-4">
            <c:out value="${method.method}" />
          </div>
        </div>
      </c:forEach>
    </div>
  </c:if>

  <c:if test="${metadatas.size() gt 0}">
    <h4>
      <spring:message code="accession.metadatas" />
    </h4>
    <ul class="funny-list">
      <c:forEach items="${metadatas}" var="metadata" varStatus="status">
        <li class="clearfix targeted ${status.count % 2 == 0 ? 'even' : 'odd'}" id="metadata-${metadata.id}">
          <div class="show pull-left">
            <sup><c:out value="${metadata.id}" /></sup> <a href="<c:url value="/data/view/${metadata.id}" />"><c:out
                value="${metadata.title}"
              /></a>
          </div>
          <div class="pull-right">
            <c:out value="${metadata.instituteCode}" />
          </div>
          <div class="pull-right">
            <c:out value="${metadata.description}" />
          </div>
        </li>
      </c:forEach>
    </ul>
  </c:if>



  <div class="audit-info">
    <c:if test="${accession.lastModifiedBy ne null}">
      <spring:message code="audit.lastModifiedBy" arguments="${jspHelper.userFullName(accession.lastModifiedBy)}" />
    </c:if>
    <local:prettyTime date="${accession.lastModifiedDate}" locale="${pageContext.response.locale}" />
  </div>

  <content tag="javascript"> <c:if test="${accessionGeo ne null and accessionGeo.latitude ne null}">
    <script type="text/javascript">
736
				jQuery(document).ready(function() {
Matija Obreza's avatar
Matija Obreza committed
737
					var map = L.map('map').setView([${accessionGeo.latitude}, ${accessionGeo.longitude}], 2);
738
739
740
741
742
743
744
745
746
					L.tileLayer('https://otile{s}-s.mqcdn.com/tiles/1.0.0/sat/{z}/{x}/{y}.png', {
					    attribution: "MapQuest",
					    styleId: 22677,
					    subdomains: ['1','2','3','4'],
					    opacity: 0.6
					}).addTo(map);
					var marker = L.marker([${accessionGeo.latitude}, ${accessionGeo.longitude}]).addTo(map);
				});
		</script>
Matija Obreza's avatar
Matija Obreza committed
747
748
749
  </c:if> <security:authorize access="isAuthenticated()">
    <c:if test="${worldclimJson ne null}">
      <script type="text/javascript">
Matija Obreza's avatar
Matija Obreza committed
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
			var monthNames = ${jspHelper.toJson(jspHelper.monthShortNames(pageContext.response.locale))};
			var worldclim = ${jspHelper.toJson(worldclimJson)};
			function arrayToData(array) {
				var ret=[];
				for (var i=0; i<12; i++) {
					ret[i]=[i, array[i]];
				}
				return ret;
			}
			var temperatureChart = [
				{ label: "Temperatures", data: arrayToData(worldclim.tempMean), lines: { show: true }, color: "rgb(255,50,50)" },
				{ id: "max", data: arrayToData(worldclim.tempMax), lines: { show: true, lineWidth: 0, fill: false }, color: "rgb(255,50,50)" },
				{ id: "min", data: arrayToData(worldclim.tempMin), lines: { show: true, lineWidth: 0, fill: 0.2 }, color: "rgb(255,50,50)", fillBetween: "max" }
			];
			var precipitationChart = [
				{ label: "Precipitation", data: arrayToData(worldclim.precipitation), bars: { show: true, align: "center" }, color: "rgb(50,50,255)" }
			];
			var temperaturePlot = $.plot($("#temperatureChart"), temperatureChart, {
				xaxis: { tickLength: 0, tickFormatter: function(v, o) {
					return monthNames[v];
				} },
				yaxis: {
						tickFormatter: function (v) {
							return v + " °C";
						}
				},
				legend: { show: false }
			});
			var precipitationPlot = $.plot($("#precipitationChart"), precipitationChart, {
				xaxis: { tickLength: 0, tickFormatter: function(v, o) {
					return monthNames[v];
				} },
				yaxis: {
						tickFormatter: function (v) {
							return v + " mm";
						}
				},
				legend: { show: false }
			});
			$( window ).resize(function() {
				precipitationPlot.resize();
				precipitationPlot.setupGrid();
				precipitationPlot.draw();
				
				temperaturePlot.resize();
				temperaturePlot.setupGrid();
				temperaturePlot.draw();
			});
		</script>
Matija Obreza's avatar
Matija Obreza committed
799
800
    </c:if>
  </security:authorize> <script type="text/javascript">
Matija Obreza's avatar
Matija Obreza committed
801
		<%@include file="/WEB-INF/jsp/wiews/ga.jsp"%>
Matija Obreza's avatar
Matija Obreza committed
802
		_pageDim = { institute: '${accession.instituteCode}', genus: '${accession.taxonomy.genus}' };
Matija Obreza's avatar
Matija Obreza committed
803
	</script> </content>
Matija Obreza's avatar
Matija Obreza committed
804
805
</body>
</html>