details.jsp 27.4 KB
Newer Older
Matija Obreza's avatar
Matija Obreza committed
1 2 3 4 5 6
<!DOCTYPE html>

<%@include file="/WEB-INF/jsp/init.jsp"%>

<html>
<head>
Matija Obreza's avatar
Matija Obreza committed
7 8 9
<title><spring:message code="accession.page.profile.title" arguments="${accession.accessionName}"
    argumentSeparator="|"
  /></title>
Matija Obreza's avatar
Matija Obreza committed
10
</head>
11
<body typeof="germplasm:GermplasmAccession">
Matija Obreza's avatar
Matija Obreza committed
12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51
  <h1>
    <span property="dwc:catalogNumber"><c:out value="${accession.accessionName}" /></span> <small
      property="dwc:institutionCode" datatype="germplasmType:wiewsInstituteID"
    ><c:out value="${accession.instituteCode}" /></small>
  </h1>

  <div class="main-col-header acn">
    <div class="sel" x-aid="${accession.id}">
      <a class="add" href=""><spring:message code="selection.add" arguments="${accession.accessionName}" /></a> <a
        class="remove" href=""
      ><spring:message code="selection.remove" arguments="${accession.accessionName}" /></a>
    </div>
  </div>

  <c:if test="${accession.historic eq true or accession.getClass().simpleName eq 'AccessionHistoric'}">
    <div class="alert alert-warning">
      <spring:message code="accession.this-is-a-historic-entry" />
    </div>
  </c:if>


  <c:if test="${accession.inTrust eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.inTrust.true" />
    </div>
  </c:if>

  <c:if test="${accession.inSvalbard eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.inSvalbard.true" />
    </div>
  </c:if>

  <c:if test="${accession.mlsStatus eq true}">
    <div class="alert alert-info">
      <spring:message code="accession.mlsStatus.true" />
    </div>
  </c:if>

  <%--
52
	<c:if test="${accession.availability eq false}">
Matija Obreza's avatar
Matija Obreza committed
53 54 55 56
		<div class="alert alert-warning">
			<spring:message code="accession.not-available-for-distribution" />
		</div>
	</c:if>
Matija Obreza's avatar
Matija Obreza committed
57 58 59 60 61 62
	
	<c:if test="${accession.availability eq true}">
		<div class="alert alert-info">
			<spring:message code="accession.available-for-distribution" />
		</div>
	</c:if>
Matija Obreza's avatar
Matija Obreza committed
63 64
--%>
  <%--
Matija Obreza's avatar
Matija Obreza committed
65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85
<div itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
	<a href="<c:url value="/wiews/${accession.institute.code}" />" itemprop="url">
	<span itemprop="title" dir="ltr">${accession.institute.fullName}</span>
	</a> ›
	<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
		<a href="<c:url value="/wiews/${accession.institute.code}/data" />" itemprop="url">
		<span itemprop="title" dir="ltr">Accessions</span>
		</a> ›
		<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
			<a title="<spring:message code="accession.taxonomy-at-institute" arguments="${accession.taxonomy.genus}|||${accession.institute.code}" argumentSeparator="|||" />" href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}" />" itemprop="url">
			<span itemprop="title" dir="ltr">${accession.taxonomy.genus}</span>
			</a> ›
			<span itemprop="child" itemscope itemtype="http://data-vocabulary.org/Breadcrumb">
				<a title="<spring:message code="accession.taxonomy-at-institute" arguments="${accession.taxonomy.genus} ${accession.taxonomy.species}|||${accession.institute.code}" argumentSeparator="|||" />" href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />" itemprop="url">
				<span itemprop="title" dir="ltr">${accession.taxonomy.genus} ${accession.taxonomy.species}</span>
				</a>
			</span>
		</span>
	</span>
</div>
--%>
Matija Obreza's avatar
Matija Obreza committed
86

Matija Obreza's avatar
Matija Obreza committed
87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229
  <div class="pseudo-right-col col-md-3">
    <c:if test="${accessionGeo.latitude ne null and accessionGeo.longitude ne null}">

      <div class="crop-location" itemscope itemtype="http://schema.org/GeoCoordinates">
        <h3>
          <spring:message code="accession.collecting.site" />
        </h3>
        <div id="map" class="map-container"></div>

        <table class="map-data">
          <tr>
            <td><spring:message code="filter.geo.latitude" />:</td>
            <td><c:out value="${accessionGeo.latitude}" /></td>
          </tr>
          <tr>
            <td><spring:message code="filter.geo.longitude" />:</td>
            <td><c:out value="${accessionGeo.longitude}" /></td>
          </tr>
          <tr>
            <td><spring:message code="accession.elevation" />:</td>
            <td><c:out value="${accessionGeo.elevation}" /></td>
          </tr>
        </table>
      </div>
    </c:if>
  </div>

  <div class="crop-details">
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.holdingInstitute" />
      </div>
      <div class="col-xs-8">
        <a property="dwc:institutionCode" href="<c:url value="/wiews/${accession.instituteCode}" />"> <c:out
            value="${accession.institute.fullName}"
          />
        </a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.holdingCountry" />
      </div>
      <div class="col-xs-8">
        <a href="<c:url value="/geo/${accession.institute.country.code3}" />"><c:out
            value="${accession.institute.country.getName(pageContext.response.locale)}"
          /></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.accessionName" />
      </div>
      <div class="col-xs-8">
        <c:out value="${accession.accessionName}" />
      </div>
    </div>

    <c:if test="${crops ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.crop" />
        </div>
        <div class="col-xs-8">
          <c:forEach items="${crops}" var="crop">
            <a href="<c:url value="/c/${crop.shortName}" />"><c:out
                value="${crop.getName(pageContext.response.locale)}"
              /></a>
          </c:forEach>
        </div>
      </div>
    </c:if>

    <c:if test="${accession.countryOfOrigin ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.origin" />
        </div>
        <div class="col-xs-8">
          <img src="<c:url value="${cdnFlagsUrl}" />/${accession.origin.toUpperCase()}.png" /> <a
            href="<c:url value="/geo/${accession.origin}" />"
          > <c:out value="${accession.countryOfOrigin.getName(pageContext.response.locale)}" />
          </a>
        </div>
      </div>
    </c:if>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.genus" />
      </div>
      <div class="col-xs-8" property="dwc:genus">
        <a href="<c:url value="/acn/t/${accession.taxonomy.genus}" />"><span dir="ltr" class="sci-name"><c:out
              value="${accession.taxonomy.genus}"
            /></span></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.species" />
      </div>
      <div class="col-xs-8">
        <a href="<c:url value="/acn/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />"><span
          class="sci-name" dir="ltr"
        ><c:out value="${accession.taxonomy.genus} ${accession.taxonomy.species}" /></span></a> <br /> <a
          href="<c:url value="/wiews/${accession.institute.code}/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />"
        ><spring:message code="accession.taxonomy-at-institute"
            arguments="${accession.taxonomy.genus} ${accession.taxonomy.species}|||${accession.institute.code}"
            argumentSeparator="|||"
          /></a>
      </div>
    </div>
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="taxonomy.taxonName" />
      </div>
      <div class="col-xs-8">
        <span dir="ltr" class="sci-name"><c:out value="${accession.taxonomy.taxonName}" /></span>
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.sampleStatus" />
      </div>
      <div class="col-xs-8" property="germplasm:biologicalStatus">
        <spring:message code="accession.sampleStatus.${accession.sampleStatus}" />
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.storage" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accession.stoRage}" var="storage">
          <div>
            <spring:message code="accession.storage.${storage}" />
          </div>
        </c:forEach>
      </div>
    </div>

230 231 232 233 234 235 236 237 238
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.acqDate" />
      </div>
      <div class="col-xs-8">
        <c:out value="${accession.acquisitionDate}" />
      </div>
    </div>

Matija Obreza's avatar
Matija Obreza committed
239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259
    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.availability" />
      </div>
      <div class="col-xs-8">
        <spring:message code="accession.availability.${accession.availability}" />
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.otherNames" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accessionAliases}" var="accessionAlias">
          <div>
            <c:out value="${accessionAlias.name}" />
            <c:if test="${accessionAlias.instCode != ''}">
              <a href="<c:url value="/wiews/${accessionAlias.instCode}" />"> ${accessionAlias.instCode} </a>
            </c:if>
            <c:if test="${accessionAlias.usedBy != ''}">
260 261
							${accessionAlias.usedBy}
						</c:if>
Matija Obreza's avatar
Matija Obreza committed
262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291
            <c:if test="${accessionAlias.lang != ''}">
              <c:out value="${accessionAlias.lang}" />
            </c:if>
            <spring:message code="accession.aliasType.${accessionAlias.aliasType}" />
          </div>
        </c:forEach>
      </div>
    </div>

    <div class="row">
      <div class="col-xs-4">
        <spring:message code="accession.duplSite" />
      </div>
      <div class="col-xs-8">
        <c:forEach items="${accession.duplSite.split('[;,]')}" var="duplSite">
          <div>
            <spring:message code="${duplSite}" />
          </div>
        </c:forEach>
      </div>
    </div>


    <c:if test="${accessionExchange ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.donor.institute" />
        </div>
        <div class="col-xs-8">
          <c:if test="${accessionExchange.donorInstitute eq null}">
292 293
						${accessionExchange.donorName}
						</c:if>
Matija Obreza's avatar
Matija Obreza committed
294 295 296 297 298 299 300 301 302 303
          ${accessionExchange.donorInstitute}
        </div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.donor.accessionNumber" />
        </div>
        <div class="col-xs-8">${accessionExchange.accNumbDonor}</div>
      </div>
    </c:if>
Matija Obreza's avatar
Matija Obreza committed
304

Matija Obreza's avatar
Matija Obreza committed
305
    <c:if test="${accession.uuid ne null}">
Matija Obreza's avatar
Matija Obreza committed
306 307 308
      <div class="row text-muted">
        <div class="col-xs-4">
          <spring:message code="accession.uuid" />
Matija Obreza's avatar
Matija Obreza committed
309
        </div>
Matija Obreza's avatar
Matija Obreza committed
310 311
        <div class="col-xs-8">
          <span property="dc:identifier">urn:uuid:<c:out value="${accession.uuid}" /></span>
Matija Obreza's avatar
Matija Obreza committed
312
        </div>
Matija Obreza's avatar
Matija Obreza committed
313 314 315 316 317 318 319 320 321 322 323 324
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.purl" />
        </div>
        <div class="col-xs-8">
          <span property="dc:identifier"><a href="https://purl.org/germplasm/id/${accession.uuid}"><c:out
                value="https://purl.org/germplasm/id/${accession.uuid}"
              /></a></span>
        </div>
      </div>
    </c:if>
Matija Obreza's avatar
Matija Obreza committed
325

326 327 328 329 330 331 332 333 334 335 336 337

    <c:if test="${accession.acceUrl ne null}">
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.acceUrl" />
        </div>
        <div class="col-xs-8">
          <a target="_blank" href="<c:out value="${accession.acceUrl}"  />"><c:out value="${accession.acceUrl}" /></a>
        </div>
      </div>
    </c:if>

Matija Obreza's avatar
Matija Obreza committed
338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496
    <c:if test="${accessionCollect ne null}">
      <h4>
        <spring:message code="accession.collecting" />
      </h4>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.institute" />
        </div>
        <div class="col-xs-8">${accessionCollect.collCode}</div>
      </div>
      <c:if test="${accessionCollect.collName ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.collecting.institute" />
          </div>
          <div class="col-xs-8">${accessionCollect.collName}${accessionCollect.collInstAddress}</div>
        </div>
      </c:if>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.mission" />
        </div>
        <div class="col-xs-8">
          <c:out value="${accessionCollect.collMissId}" />
        </div>
        <%--				<div class="col-xs-8"><a href="<c:url value="/collectingmission"><c:param name="collMissId" value="${accessionCollect.collMissId}" /></c:url>"><c:out value="${accessionCollect.collMissId}" /></a></div> --%>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.date" />
        </div>
        <div class="col-xs-8">${accessionCollect.collDate}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.number" />
        </div>
        <div class="col-xs-8">${accessionCollect.collNumb}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.site" />
        </div>
        <div class="col-xs-8">${accessionCollect.collSite}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.collecting.source" />
        </div>
        <div class="col-xs-8">
          <spring:message code="accession.collectingSource.${accessionCollect.collSrc}" />
        </div>
      </div>
    </c:if>

    <c:if test="${accessionBreeding ne null}">
      <h4>
        <spring:message code="accession.breeding" />
      </h4>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.breederCode" />
        </div>
        <div class="col-xs-8">${accessionBreeding.breederCode}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.pedigree" />
        </div>
        <div class="col-xs-8">${accessionBreeding.pedigree}</div>
      </div>
    </c:if>


    <c:if test="${accessionGeo ne null}">
      <h4>
        <spring:message code="accession.geo" />
      </h4>

      <c:if test="${accessionCollect.collSite ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.collecting.site" />
          </div>
          <div class="col-xs-8">${accessionCollect.collSite}</div>
        </div>
      </c:if>
      <c:if test="${accessionGeo.latitude ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.geolocation" />
          </div>
          <div class="col-xs-8">${accessionGeo.latitude},${accessionGeo.longitude}</div>
        </div>
      </c:if>
      <c:if test="${accessionGeo.elevation ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.elevation" />
          </div>
          <div class="col-xs-8">${accessionGeo.elevation}<span class="uom">m</span>
          </div>
        </div>
      </c:if>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.geo.datum" />
        </div>
        <div class="col-xs-8">${accessionGeo.datum}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.geo.method" />
        </div>
        <div class="col-xs-8">${accessionGeo.method}</div>
      </div>
      <c:if test="${accessionGeo.uncertainty ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.geo.uncertainty" />
          </div>
          <div class="col-xs-8">${accessionGeo.uncertainty}<span class="uom">m</span>
          </div>
        </div>
      </c:if>
    </c:if>

    <security:authorize access="isAuthenticated()">
      <!-- WorldClim.org -->
      <c:if test="${worldclimJson ne null}">
        <h4>
          <spring:message code="worldclim.monthly.title" />
        </h4>

        <!-- Charts -->
        <div class="row">
          <div class="col-xs-12 col-sm-6">
            <h5>
              <spring:message code="worldclim.monthly.temperatures.title" />
            </h5>
            <div id="temperatureChart" style="height: 150px;"></div>
          </div>
          <div class="col-xs-12 col-sm-6">
            <h5>
              <spring:message code="worldclim.monthly.precipitation.title" />
            </h5>
            <div id="precipitationChart" style="height: 150px;"></div>
          </div>
        </div>

        <!-- Data -->
        <div class="row">
          <div class="col-sm-offset-4 col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <strong><c:out value="${jspHelper.monthShortNames(pageContext.response.locale)[i]}" /></strong>
497
                </div>
Matija Obreza's avatar
Matija Obreza committed
498 499 500 501 502 503 504 505 506 507 508 509 510
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMin" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMin[i]}" />
511
                </div>
Matija Obreza's avatar
Matija Obreza committed
512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMean" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMean[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.tempMax" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.tempMax[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
        <div class="row">
          <div class="col-sm-4 col-xs-12">
            <spring:message code="worldclim.monthly.precipitation" />
          </div>
          <div class="col-sm-8 col-xs-12">
            <div class="row">
              <c:forEach var="i" begin="0" end="11">
                <div class="col-xs-1 text-right">
                  <fmt:formatNumber value="${worldclimJson.precipitation[i]}" />
                </div>
              </c:forEach>
            </div>
          </div>
        </div>
Matija Obreza's avatar
Matija Obreza committed
558

Matija Obreza's avatar
Matija Obreza committed
559
        <%-- Needs work 
Matija Obreza's avatar
Matija Obreza committed
560 561 562 563 564 565 566
				<h4><spring:message code="worldclim.other-climate" /></h4>
				<c:forEach items="${worldclimJson.other.keySet()}" var="worldclimDescriptor">
				<div class="row">
					<div class="col-xs-4"><c:out value="${worldclimDescriptor.title}" /></div>
					<div class="col-xs-8"><fmt:formatNumber value="${worldclimJson.other[worldclimDescriptor]}" /><span class="uom">${worldclimDescriptor.uom}</span></div>
				</div>
				</c:forEach>
Matija Obreza's avatar
Matija Obreza committed
567
				--%>
Matija Obreza's avatar
Matija Obreza committed
568 569 570 571 572 573 574 575
      </c:if>
    </security:authorize>

    <c:if test="${svalbardData ne null}">
      <h4>
        <spring:message code="accession.svalbard-data" />
      </h4>

576 577 578 579 580 581 582 583 584 585 586 587 588
      <c:if test="${svalbardData.unitId ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.svalbard-data.url" />
          </div>
          <div class="col-xs-8">
            <a target="_blank" title="<spring:message code="accession.svalbard-data.url-title" />"
              href="http://nordgen.org/sgsv/index.php?app=data_unit&unit=sgsv&unit_id=${svalbardData.unitId}"
            ><spring:message code="accession.svalbard-data.url-text" arguments="${accession.accessionName}" /></a>
          </div>
        </div>
      </c:if>

Matija Obreza's avatar
Matija Obreza committed
589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.taxonomy" />
        </div>
        <div class="col-xs-8">${svalbardData.taxonomy}</div>
      </div>

      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.depositDate" />
        </div>
        <div class="col-xs-8">${svalbardData.depositDate}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.boxNumber" />
        </div>
        <div class="col-xs-8">${svalbardData.boxNumber}</div>
      </div>
      <div class="row">
        <div class="col-xs-4">
          <spring:message code="accession.svalbard-data.quantity" />
        </div>
        <div class="col-xs-8">${svalbardData.quantity}</div>
      </div>

615 616 617 618 619 620 621 622 623 624
      <c:if test="${svalbardData.acceUrl ne null}">
        <div class="row">
          <div class="col-xs-4">
            <spring:message code="accession.acceUrl" />
          </div>
          <div class="col-xs-8">
            <a href="<c:out value="${svalbardData.acceUrl}" />"><c:out value="${svalbardData.acceUrl}" /></a>
          </div>
        </div>
      </c:if>
Matija Obreza's avatar
Matija Obreza committed
625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645
    </c:if>


    <c:if test="${fn:length(accessionRemarks) gt 0}">
      <h4>
        <spring:message code="accession.remarks" />
      </h4>
    </c:if>
    <c:forEach items="${accessionRemarks}" var="accessionRemark">
      <div class="row">
        <div class="col-xs-4">
          <c:out value="${accessionRemark.fieldName}" />
        </div>
        <div class="col-xs-8">
          <c:out value="${accessionRemark.remark}" />
        </div>
      </div>
    </c:forEach>
  </div>


Matija Obreza's avatar
Matija Obreza committed
646 647
  <c:if test="${pdci ne null}">
    <div class="crop-details">
648

Matija Obreza's avatar
Matija Obreza committed
649 650 651 652 653 654 655 656 657 658 659 660 661
      <h4>
        <spring:message code="accession.pdci" />
      </h4>
      <div class="jumbotron pdci-score">
        <div>
          <h3>
            <spring:message code="accession.pdci.jumbo" arguments="${pdci.score}" />
          </h3>
          <small> <c:if test="${institutePDCI ne null and institutePDCI.count > 0}">
              <spring:message code="accession.pdci.institute-avg" arguments="${institutePDCI.avg}" />
            </c:if> <a href="<c:url value="/content/passport-data-completeness-index" />"><spring:message
                code="accession.pdci.about-link"
              /></a></small>
662 663
        </div>
      </div>
Matija Obreza's avatar
Matija Obreza committed
664

Matija Obreza's avatar
Matija Obreza committed
665 666 667 668
      <local:pdci value="${pdci}" />

    </div>
  </c:if>
Matija Obreza's avatar
Matija Obreza committed
669

Matija Obreza's avatar
Matija Obreza committed
670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732
  <c:if test="${methods.size() gt 0}">

    <div class="crop-details">
      <h4>
        <spring:message code="accession.methods" />
      </h4>
      <c:forEach items="${methods}" var="method" varStatus="status">
        <div class="row targeted" id="method${method.id}">
          <div class="col-xs-6 col-sm-4">
            <c:out value="${method.parameter.title}" />
          </div>
          <div class="col-xs-6 col-sm-4">
            <c:forEach items="${methodValues[method.id]}" var="val">
              <div>
                <c:out value="${method.decode(val.value)}" />
                <span class="uom"><c:out value="${method.unit}" /></span> <sup><a
                  href="#metadata-${val.experimentId}"
                ><c:out value="${val.experimentId}" /></a></sup>
              </div>
            </c:forEach>
          </div>
          <div class="col-xs-12 col-sm-4">
            <c:out value="${method.method}" />
          </div>
        </div>
      </c:forEach>
    </div>
  </c:if>

  <c:if test="${metadatas.size() gt 0}">
    <h4>
      <spring:message code="accession.metadatas" />
    </h4>
    <ul class="funny-list">
      <c:forEach items="${metadatas}" var="metadata" varStatus="status">
        <li class="clearfix targeted ${status.count % 2 == 0 ? 'even' : 'odd'}" id="metadata-${metadata.id}">
          <div class="show pull-left">
            <sup><c:out value="${metadata.id}" /></sup> <a href="<c:url value="/data/view/${metadata.id}" />"><c:out
                value="${metadata.title}"
              /></a>
          </div>
          <div class="pull-right">
            <c:out value="${metadata.instituteCode}" />
          </div>
          <div class="pull-right">
            <c:out value="${metadata.description}" />
          </div>
        </li>
      </c:forEach>
    </ul>
  </c:if>



  <div class="audit-info">
    <c:if test="${accession.lastModifiedBy ne null}">
      <spring:message code="audit.lastModifiedBy" arguments="${jspHelper.userFullName(accession.lastModifiedBy)}" />
    </c:if>
    <local:prettyTime date="${accession.lastModifiedDate}" locale="${pageContext.response.locale}" />
  </div>

  <content tag="javascript"> <c:if test="${accessionGeo ne null and accessionGeo.latitude ne null}">
    <script type="text/javascript">
733
				jQuery(document).ready(function() {
Matija Obreza's avatar
Matija Obreza committed
734
					var map = L.map('map').setView([${accessionGeo.latitude}, ${accessionGeo.longitude}], 2);
735 736 737 738 739 740 741 742 743
					L.tileLayer('https://otile{s}-s.mqcdn.com/tiles/1.0.0/sat/{z}/{x}/{y}.png', {
					    attribution: "MapQuest",
					    styleId: 22677,
					    subdomains: ['1','2','3','4'],
					    opacity: 0.6
					}).addTo(map);
					var marker = L.marker([${accessionGeo.latitude}, ${accessionGeo.longitude}]).addTo(map);
				});
		</script>
Matija Obreza's avatar
Matija Obreza committed
744 745 746
  </c:if> <security:authorize access="isAuthenticated()">
    <c:if test="${worldclimJson ne null}">
      <script type="text/javascript">
Matija Obreza's avatar
Matija Obreza committed
747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795
			var monthNames = ${jspHelper.toJson(jspHelper.monthShortNames(pageContext.response.locale))};
			var worldclim = ${jspHelper.toJson(worldclimJson)};
			function arrayToData(array) {
				var ret=[];
				for (var i=0; i<12; i++) {
					ret[i]=[i, array[i]];
				}
				return ret;
			}
			var temperatureChart = [
				{ label: "Temperatures", data: arrayToData(worldclim.tempMean), lines: { show: true }, color: "rgb(255,50,50)" },
				{ id: "max", data: arrayToData(worldclim.tempMax), lines: { show: true, lineWidth: 0, fill: false }, color: "rgb(255,50,50)" },
				{ id: "min", data: arrayToData(worldclim.tempMin), lines: { show: true, lineWidth: 0, fill: 0.2 }, color: "rgb(255,50,50)", fillBetween: "max" }
			];
			var precipitationChart = [
				{ label: "Precipitation", data: arrayToData(worldclim.precipitation), bars: { show: true, align: "center" }, color: "rgb(50,50,255)" }
			];
			var temperaturePlot = $.plot($("#temperatureChart"), temperatureChart, {
				xaxis: { tickLength: 0, tickFormatter: function(v, o) {
					return monthNames[v];
				} },
				yaxis: {
						tickFormatter: function (v) {
							return v + " °C";
						}
				},
				legend: { show: false }
			});
			var precipitationPlot = $.plot($("#precipitationChart"), precipitationChart, {
				xaxis: { tickLength: 0, tickFormatter: function(v, o) {
					return monthNames[v];
				} },
				yaxis: {
						tickFormatter: function (v) {
							return v + " mm";
						}
				},
				legend: { show: false }
			});
			$( window ).resize(function() {
				precipitationPlot.resize();
				precipitationPlot.setupGrid();
				precipitationPlot.draw();
				
				temperaturePlot.resize();
				temperaturePlot.setupGrid();
				temperaturePlot.draw();
			});
		</script>
Matija Obreza's avatar
Matija Obreza committed
796 797
    </c:if>
  </security:authorize> <script type="text/javascript">
Matija Obreza's avatar
Matija Obreza committed
798
		<%@include file="/WEB-INF/jsp/wiews/ga.jsp"%>
Matija Obreza's avatar
Matija Obreza committed
799
		_pageDim = { institute: '${accession.instituteCode}', genus: '${accession.taxonomy.genus}' };
Matija Obreza's avatar
Matija Obreza committed
800
	</script> </content>
Matija Obreza's avatar
Matija Obreza committed
801 802
</body>
</html>