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Commit 4b0b492d authored by Matija Obreza's avatar Matija Obreza
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Default search on Accessions and AccessionAliases

parent 66d0394f
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Showing with 139 additions and 19 deletions
src/main/java/org/genesys2/server/service/SearchService.java
View file @ 4b0b492d
......@@ -18,9 +18,10 @@ package org.genesys2.server.service;
import org.hibernate.search.SearchException;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.Pageable;
public interface SearchService {
Page<?> search(String searchQuery, String[] fields, int startAt, int maxResults) throws SearchException;
Page<?> search(String searchQuery, String[] fields, Pageable pageable, Class<?> ... targetClass) throws SearchException;
}
src/main/java/org/genesys2/server/service/impl/SearchServiceImpl.java
View file @ 4b0b492d
......@@ -34,6 +34,7 @@ import org.hibernate.search.SearchException;
import org.hibernate.search.jpa.FullTextEntityManager;
import org.hibernate.search.jpa.Search;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.Pageable;
import org.springframework.stereotype.Service;
import org.springframework.transaction.annotation.Transactional;
......@@ -46,14 +47,15 @@ public class SearchServiceImpl implements SearchService {
private EntityManager entityManager;
/**
* @param classes
* @return
* @throws SearchException
*/
@Override
public Page<?> search(String searchQuery, String[] fields, int page, int pageSize) throws SearchException {
public Page<?> search(String searchQuery, String[] fields, Pageable pageable, Class<?> ... classes) throws SearchException {
LOG.debug("Searching for: " + searchQuery);
LucenePage<Object> lucenePage = new LucenePage<Object>(page, pageSize);
LucenePage<Object> lucenePage = new LucenePage<Object>(pageable.getPageNumber(), pageable.getPageSize());
if (searchQuery == null)
return null;
......@@ -65,11 +67,11 @@ public class SearchServiceImpl implements SearchService {
try {
luceneQuery = getLuceneQuery(searchQuery, fields);
org.hibernate.search.jpa.FullTextQuery query = ftEm.createFullTextQuery(luceneQuery);
org.hibernate.search.jpa.FullTextQuery query = ftEm.createFullTextQuery(luceneQuery, classes);
lucenePage.setTotalElements(query.getResultSize());
@SuppressWarnings("unchecked")
List<Object> data = query.setMaxResults(pageSize).setFirstResult(page * pageSize).getResultList();
List<Object> data = query.setMaxResults(pageable.getPageSize()).setFirstResult(pageable.getPageNumber() * pageable.getPageSize())
.getResultList();
prefetch(data);
......
src/main/java/org/genesys2/server/servlet/controller/SearchController.java
View file @ 4b0b492d
......@@ -19,33 +19,55 @@ package org.genesys2.server.servlet.controller;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.genesys2.server.model.genesys.Accession;
import org.genesys2.server.model.genesys.AccessionAlias;
import org.genesys2.server.service.SearchService;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.annotation.Scope;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.PageRequest;
import org.springframework.stereotype.Controller;
import org.springframework.ui.ModelMap;
import org.springframework.web.bind.annotation.RequestMapping;
import org.springframework.web.bind.annotation.RequestParam;
import org.springframework.web.util.HtmlUtils;
@Controller
@RequestMapping("/search")
@Scope("request")
public class SearchController {
public static final Log LOG = LogFactory.getLog(SearchController.class);
@Autowired
private SelectionBean selectionBean;
@Autowired
SearchService searchService;
@RequestMapping
@RequestMapping("/search")
public String find(ModelMap model, @RequestParam(required = false, value = "q") String searchQuery,
@RequestParam(value = "page", required = false, defaultValue = "1") int page) {
model.addAttribute("q", HtmlUtils.htmlEscape(searchQuery));
model.addAttribute("q", searchQuery);
if (!StringUtils.isBlank(searchQuery)) {
LOG.info("Searching for: " + searchQuery);
Page<?> x = searchService.search(searchQuery, new String[] { "title", "body", "description" }, page - 1, 50);
Page<?> x = searchService.search(searchQuery, new String[] { "title", "body", "description" }, new PageRequest(page - 1, 50));
model.addAttribute("pagedData", x);
}
return "/search/index";
}
@RequestMapping("/acn/search")
public String findAccession(ModelMap model, @RequestParam(required = false, value = "q") String searchQuery,
@RequestParam(value = "page", required = false, defaultValue = "1") int page) {
model.addAttribute("q", searchQuery);
if (!StringUtils.isBlank(searchQuery)) {
LOG.info("Searching for: " + searchQuery);
Page<?> x = searchService.search(searchQuery, new String[] { "title", "body", "description" }, new PageRequest(page - 1, 50), Accession.class,
AccessionAlias.class);
model.addAttribute("pagedData", x);
}
model.addAttribute("selection", selectionBean);
return "/search/accessions";
}
}
src/main/webapp/WEB-INF/decorator/header.jsp
View file @ 4b0b492d
......@@ -7,7 +7,7 @@
<a href="<c:url value="/" />"><img src="<c:url value="/html/images/logo_genesys.png" />" alt="Genesys - Gateway to Genetic Resources" title="Genesys - Gateway to Genetic Resources" /></a>
</div>
<form class="navbar-form navbar-left" role="search" id="search" method="get" action="<c:url value="/search" />">
<form class="navbar-form navbar-left" role="search" id="search" method="get" action="<c:url value="/acn/search" />">
<div class="form-group">
<input type="text" class="form-control" name="q" placeholder="<spring:message code="search.input.placeholder" />">
</div>
......
src/main/webapp/WEB-INF/jsp/search/accessions.jsp 0 → 100644
View file @ 4b0b492d
<!DOCTYPE html>
<%@include file="/WEB-INF/jsp/init.jsp"%>
<%@ taglib prefix="sec" uri="http://www.springframework.org/security/tags"%>
<html>
<head>
<title><spring:message code="search.page.title" /></title>
</head>
<body>
<h1><spring:message code="search.page.title" /></h1>
<div class="main-col-header clearfix">
<div class="nav-header">
<div class="results"><spring:message code="paged.totalElements" arguments="${pagedData.totalElements}" /></div>
<div class="pagination">
<spring:message code="paged.pageOfPages" arguments="${pagedData.number+1},${pagedData.totalPages}" />
<a class="${pagedData.number eq 0 ? 'disabled' :''}" href="?q=${q}&amp;page=${pagedData.number eq 0 ? 1 : pagedData.number}"><spring:message code="pagination.previous-page" /></a> <a href="?q=${q}&amp;page=${pagedData.number + 2}"><spring:message code="pagination.next-page" /></a>
</div>
</div>
</div>
<div class="applied-filters">
<form class="" method="get" action="<c:url value="/acn/search" />">
<div class="row">
<div class="col-md-4"><input type="text" name="q" class="form-control" value="<c:out value="${q}" />" /></div>
<div class="col-md-2"><input type="submit" value="<spring:message code="search.button.label" />" class="btn" /></div>
</div>
</form>
</div>
<c:if test="${pagedData ne null and pagedData.totalElements gt 0}">
<table class="accessions">
<thead>
<tr>
<td class="idx-col"></td>
<c:if test="${selection ne null}">
<td />
</c:if>
<td><spring:message code="accession.accessionName" /></td>
<td><spring:message code="accession.otherNames" /></td>
<td><spring:message code="accession.taxonomy" /></td>
<td class="notimportant"><spring:message code="accession.origin" /></td>
<td class="notimportant"><spring:message code="accession.sampleStatus" /></td>
<td class="notimportant"><spring:message code="accession.holdingInstitute" /></td>
</tr>
</thead>
<tbody>
<c:forEach items="${pagedData.content}" var="searchResult" varStatus="status">
<c:set value="${searchResult.getClass().simpleName}" var="clazz" />
<c:if test="${clazz.contains('_$$_')}">
<c:set var="clazz" value="${clazz.substring(0, clazz.indexOf('_$$_'))}" />
</c:if>
<c:choose>
<c:when test="${clazz eq 'Accession'}">
<c:set var="accession" value="${searchResult}" />
<c:set var="name" value="" />
</c:when>
<c:when test="${clazz eq 'AccessionAlias'}">
<c:set var="accession" value="${searchResult.accession}" />
<c:set var="name" value="${searchResult.name}" />
</c:when>
<c:otherwise>
<c:remove var="accession" />
<c:remove var="name" />
</c:otherwise>
</c:choose>
<tr class="acn">
<td class="idx-col">${status.count + pagedData.size * pagedData.number}</td>
<c:if test="${selection ne null}">
<td class="sel ${selection.containsId(accession.id) ? 'picked' : ''}" x-aid="${accession.id}"></td>
</c:if>
<td><a href="<c:url value="/acn/id/${accession.id}" />"><b>
<c:out value="${accession.accessionName}" />
</b></a></td>
<td><c:out value="${name}" /></td>
<%-- <td><a href="<c:url value="/acn/t/${accession.taxonomy.genus}/${accession.taxonomy.species}" />"><c:out value="${accession.taxonomy.taxonName}" /></a></td> --%>
<td><c:out value="${accession.taxonomy.taxonName}" /></td>
<%-- <td class="notimportant"><a href="<c:url value="/geo/${accession.origin.toLowerCase()}" />"><c:out value="${accession.countryOfOrigin.name}" /></a></td> --%>
<td class="notimportant"><c:out value="${accession.countryOfOrigin.getName(pageContext.response.locale)}" /></td>
<td class="notimportant"><spring:message code="accession.sampleStatus.${accession.sampleStatus}" /></td>
<td class="notimportant"><a href="<c:url value="/wiews/${accession.institute.code.toLowerCase()}" />"><c:out value="${accession.institute.code}" /></a></td>
</tr>
</c:forEach>
</tbody>
</table>
</c:if>
</body>
</html>
\ No newline at end of file
src/main/webapp/WEB-INF/jsp/search/index.jsp
View file @ 4b0b492d
......@@ -10,21 +10,26 @@
<body>
<h1><spring:message code="search.page.title" /></h1>
<form class="form-search" method="get" action="<c:url value="/search" />">
<input type="text" name="q" class="" value="<c:out value="${q}" />" /> <input type="submit" value="<spring:message code="search.button.label" />" class="btn" />
<div class="main-col-header clearfix">
<form class="" method="get" action="<c:url value="/search" />">
<div class="input-group col-lg-3"><span class="input-group-btn"><input type="text" name="q" class="span3 form-control" value="<c:out value="${q}" />" /><input type="submit" value="<spring:message code="search.button.label" />" class="btn" /></span></div>
</form>
</div>
<c:if test="${pagedData.totalElements eq 0}">
<div class="alert alert-info"><spring:message code="search.no-results" /></div>
</c:if>
<c:if test="${pagedData ne null and pagedData.totalElements gt 0}">
<div class="nav-header">
<spring:message code="paged.totalElements" arguments="${pagedData.totalElements}" />
<br />
<spring:message code="paged.pageOfPages" arguments="${pagedData.number+1},${pagedData.totalPages}" />
<a class="${pagedData.number eq 0 ? 'disabled' :''}" href="?q=${q}&amp;page=${pagedData.number eq 0 ? 1 : pagedData.number}"><spring:message code="pagination.previous-page" /></a> <a href="?q=${q}&amp;page=${pagedData.number + 2}"><spring:message code="pagination.next-page" /></a>
<div class="main-col-header clearfix">
<div class="nav-header pull-left">
<div class="results"><spring:message code="paged.totalElements" arguments="${pagedData.totalElements}" /></div>
<div class="pagination">
<spring:message code="paged.pageOfPages" arguments="${pagedData.number+1},${pagedData.totalPages}" />
<a class="${pagedData.number eq 0 ? 'disabled' :''}" href="?q=${q}&amp;page=${pagedData.number eq 0 ? 1 : pagedData.number}"><spring:message code="pagination.previous-page" /></a> <a href="?q=${q}&amp;page=${pagedData.number + 2}"><spring:message code="pagination.next-page" /></a>
</div>
</div>
</div>
<ul class="funny-list">
......
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