Java package organization

src/main/java/org/genesys2/rest/ApplicationException.java → src/main/java/org/genesys2/server/ApplicationException.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest;
+package org.genesys2.server;
 
 public class ApplicationException extends Exception {
 	private static final long serialVersionUID = 7077761656242902954L;

src/main/java/org/genesys2/rest/common/aspect/AsAdmin.java → src/main/java/org/genesys2/server/common/aspect/AsAdmin.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.aspect;
+package org.genesys2.server.common.aspect;
 
 import java.lang.annotation.Documented;
 import java.lang.annotation.ElementType;

src/main/java/org/genesys2/rest/common/aspect/AsAdminAspect.java → src/main/java/org/genesys2/server/common/aspect/AsAdminAspect.java

@@ -15,14 +15,14 @@
  **/
 
 
-package org.genesys2.rest.common.aspect;
+package org.genesys2.server.common.aspect;
 
 import java.util.Arrays;
 
 import org.aspectj.lang.ProceedingJoinPoint;
 import org.aspectj.lang.annotation.Around;
 import org.aspectj.lang.annotation.Aspect;
-import org.genesys2.rest.common.model.UserRole;
+import org.genesys2.server.common.model.UserRole;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.security.core.Authentication;
@@ -43,8 +43,8 @@ public class AsAdminAspect {
             Arrays.asList(new SimpleGrantedAuthority(UserRole.ADMINISTRATOR.getName()))
     );
 
-    @Around("org.genesys2.rest.common.aspect.SystemArchitecture.allServices()" +
-            " && @annotation(org.genesys2.rest.common.aspect.AsAdmin)")
+    @Around("org.genesys2.server.common.aspect.SystemArchitecture.allServices()" +
+            " && @annotation(org.genesys2.server.common.aspect.AsAdmin)")
     public Object authenticateAsAdmin(ProceedingJoinPoint pjp) throws Throwable {
         //store previous version of auth (if any exists)
         Authentication prevAuth = SecurityContextHolder.getContext().getAuthentication();

src/main/java/org/genesys2/rest/common/aspect/SystemArchitecture.java → src/main/java/org/genesys2/server/common/aspect/SystemArchitecture.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.aspect;
+package org.genesys2.server.common.aspect;
 
 import org.aspectj.lang.annotation.Aspect;
 import org.aspectj.lang.annotation.Pointcut;
@@ -31,19 +31,19 @@ public class SystemArchitecture {
     public void allServices(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.common.service.*.*(..))")
+    @Pointcut("execution(* org.genesys2.server.common.service.*.*(..))")
     public void businessServices(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.common.listener.sample.*.*(..))")
+    @Pointcut("execution(* org.genesys2.server.common.listener.sample.*.*(..))")
     public void sampleServices(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.common.security.*.*(..))")
+    @Pointcut("execution(* org.genesys2.server.common.security.*.*(..))")
     public void securityServices(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.servlet.controller.*.*(..))")
+    @Pointcut("execution(* org.genesys2.server.servlet.controller.*.*(..))")
     public void controllers(){
     }
 
@@ -52,15 +52,15 @@ public class SystemArchitecture {
      */
 
     //USER
-    @Pointcut("execution(* org.genesys2.rest.common.service.impl.UserServiceImpl.addUser(..))")
+    @Pointcut("execution(* org.genesys2.server.common.service.impl.UserServiceImpl.addUser(..))")
     public void addUserModel(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.common.service.impl.UserServiceImpl.updateUser(..))")
+    @Pointcut("execution(* org.genesys2.server.common.service.impl.UserServiceImpl.updateUser(..))")
     public void changeUserModel(){
     }
 
-    @Pointcut("execution(* org.genesys2.rest.common.service.impl.UserServiceImpl.removeUser(..))")
+    @Pointcut("execution(* org.genesys2.server.common.service.impl.UserServiceImpl.removeUser(..))")
     public void removeUserModel(){
     }
 

src/main/java/org/genesys2/rest/common/config/ApplicationProps.java → src/main/java/org/genesys2/server/common/config/ApplicationProps.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.config;
+package org.genesys2.server.common.config;
 
 import org.springframework.beans.factory.annotation.Value;
 import org.springframework.stereotype.Service;

src/main/java/org/genesys2/rest/common/exception/NoUserFoundException.java → src/main/java/org/genesys2/server/common/exception/NoUserFoundException.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.exception;
+package org.genesys2.server.common.exception;
 
 public class NoUserFoundException extends UserException {
 

src/main/java/org/genesys2/rest/common/exception/NotUniqueUserException.java → src/main/java/org/genesys2/server/common/exception/NotUniqueUserException.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.exception;
+package org.genesys2.server.common.exception;
 
 public class NotUniqueUserException extends UserException {
 

src/main/java/org/genesys2/rest/common/exception/UserException.java → src/main/java/org/genesys2/server/common/exception/UserException.java

@@ -15,9 +15,9 @@
  **/
 
 
-package org.genesys2.rest.common.exception;
+package org.genesys2.server.common.exception;
 
-import org.genesys2.rest.ApplicationException;
+import org.genesys2.server.ApplicationException;
 
 public class UserException extends ApplicationException {
     /**

src/main/java/org/genesys2/rest/common/factory/ObjectFactory.java → src/main/java/org/genesys2/server/common/factory/ObjectFactory.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.factory;
+package org.genesys2.server.common.factory;
 
 import org.springframework.beans.BeansException;
 import org.springframework.context.ApplicationContext;

src/main/java/org/genesys2/rest/common/listener/RunAsAdminListener.java → src/main/java/org/genesys2/server/common/listener/RunAsAdminListener.java

@@ -15,11 +15,11 @@
  **/
 
 
-package org.genesys2.rest.common.listener;
+package org.genesys2.server.common.listener;
 
 import java.util.concurrent.Callable;
 
-import org.genesys2.rest.common.security.AsAdminInvoker;
+import org.genesys2.server.common.security.AsAdminInvoker;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.InitializingBean;

src/main/java/org/genesys2/rest/common/listener/sample/CreateAdminListener.java → src/main/java/org/genesys2/server/common/listener/sample/CreateAdminListener.java

@@ -14,15 +14,15 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.listener.sample;
+package org.genesys2.server.common.listener.sample;
 
 import java.util.HashSet;
 import java.util.Set;
 
-import org.genesys2.rest.common.listener.RunAsAdminListener;
-import org.genesys2.rest.common.model.UserRole;
-import org.genesys2.rest.common.model.impl.User;
-import org.genesys2.rest.common.service.UserService;
+import org.genesys2.server.common.listener.RunAsAdminListener;
+import org.genesys2.server.common.model.UserRole;
+import org.genesys2.server.common.model.impl.User;
+import org.genesys2.server.common.service.UserService;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Service;
 

src/main/java/org/genesys2/rest/common/lucene/genesys/AccessionBridge.java → src/main/java/org/genesys2/server/common/lucene/genesys/AccessionBridge.java

-package org.genesys2.rest.common.lucene.genesys;
+package org.genesys2.server.common.lucene.genesys;
 
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 import org.apache.lucene.document.Document;
 import org.apache.lucene.document.Field;
-import org.genesys2.rest.common.model.genesys.Accession;
-import org.genesys2.rest.common.model.genesys.AllAccnames;
-import org.genesys2.rest.common.model.genesys.AllAcqBreeding;
-import org.genesys2.rest.common.model.genesys.AllAcqCollect;
-import org.genesys2.rest.common.model.genesys.AllAcqExchange;
-import org.genesys2.rest.common.model.genesys.Taxonomy;
-import org.genesys2.rest.common.model.impl.Country;
-import org.genesys2.rest.common.model.impl.FaoInstitute;
+import org.genesys2.server.common.model.genesys.Accession;
+import org.genesys2.server.common.model.genesys.AllAccnames;
+import org.genesys2.server.common.model.genesys.AllAcqBreeding;
+import org.genesys2.server.common.model.genesys.AllAcqCollect;
+import org.genesys2.server.common.model.genesys.AllAcqExchange;
+import org.genesys2.server.common.model.genesys.Taxonomy;
+import org.genesys2.server.common.model.impl.Country;
+import org.genesys2.server.common.model.impl.FaoInstitute;
 import org.hibernate.search.bridge.FieldBridge;
 import org.hibernate.search.bridge.LuceneOptions;
 

src/main/java/org/genesys2/rest/common/lucene/genesys/FaoInstituteBridge.java → src/main/java/org/genesys2/server/common/lucene/genesys/FaoInstituteBridge.java

-package org.genesys2.rest.common.lucene.genesys;
+package org.genesys2.server.common.lucene.genesys;
 
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 import org.apache.lucene.document.Document;
 import org.apache.lucene.document.Field;
-import org.genesys2.rest.common.model.impl.FaoInstitute;
+import org.genesys2.server.common.model.impl.FaoInstitute;
 import org.hibernate.search.bridge.FieldBridge;
 import org.hibernate.search.bridge.LuceneOptions;
 

src/main/java/org/genesys2/rest/common/lucene/genesys/StringDocument.java → src/main/java/org/genesys2/server/common/lucene/genesys/StringDocument.java

-package org.genesys2.rest.common.lucene.genesys;
+package org.genesys2.server.common.lucene.genesys;
 
 import org.apache.commons.lang.StringUtils;
 

src/main/java/org/genesys2/rest/common/model/AuditedModel.java → src/main/java/org/genesys2/server/common/model/AuditedModel.java

@@ -14,13 +14,13 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 import java.util.Date;
 
 import javax.persistence.MappedSuperclass;
 
-import org.genesys2.rest.common.model.impl.User;
+import org.genesys2.server.common.model.impl.User;
 
 @MappedSuperclass
 public abstract class AuditedModel extends OwnedModel {

src/main/java/org/genesys2/rest/common/model/BusinessModel.java → src/main/java/org/genesys2/server/common/model/BusinessModel.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 import javax.persistence.Column;
 import javax.persistence.GeneratedValue;

src/main/java/org/genesys2/rest/common/model/HibernateModel.java → src/main/java/org/genesys2/server/common/model/HibernateModel.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 import java.io.Serializable;
 

src/main/java/org/genesys2/rest/common/model/OwnedModel.java → src/main/java/org/genesys2/server/common/model/OwnedModel.java

@@ -14,12 +14,12 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 import javax.persistence.ManyToOne;
 import javax.persistence.MappedSuperclass;
 
-import org.genesys2.rest.common.model.impl.User;
+import org.genesys2.server.common.model.impl.User;
 
 @MappedSuperclass
 public abstract class OwnedModel extends BusinessModel {

src/main/java/org/genesys2/rest/common/model/Permissions.java → src/main/java/org/genesys2/server/common/model/Permissions.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 public enum Permissions {
     CREATE("Create"),

src/main/java/org/genesys2/rest/common/model/UserRole.java → src/main/java/org/genesys2/server/common/model/UserRole.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model;
+package org.genesys2.server.common.model;
 
 public enum  UserRole {
     USER("User"),

src/main/java/org/genesys2/rest/common/model/genesys/Accession.java → src/main/java/org/genesys2/server/common/model/genesys/Accession.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 
@@ -29,9 +29,9 @@ import javax.persistence.ManyToOne;
 import javax.persistence.OneToOne;
 import javax.persistence.Table;
 
-import org.genesys2.rest.common.lucene.genesys.AccessionBridge;
-import org.genesys2.rest.common.model.impl.Country;
-import org.genesys2.rest.common.model.impl.FaoInstitute;
+import org.genesys2.server.common.lucene.genesys.AccessionBridge;
+import org.genesys2.server.common.model.impl.Country;
+import org.genesys2.server.common.model.impl.FaoInstitute;
 import org.hibernate.search.annotations.ClassBridge;
 import org.hibernate.search.annotations.DocumentId;
 import org.hibernate.search.annotations.Indexed;

src/main/java/org/genesys2/rest/common/model/genesys/AccessionTrait.java → src/main/java/org/genesys2/server/common/model/genesys/AccessionTrait.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import java.io.Serializable;
 

src/main/java/org/genesys2/rest/common/model/genesys/AllAccnames.java → src/main/java/org/genesys2/server/common/model/genesys/AllAccnames.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/AllAcqBreeding.java → src/main/java/org/genesys2/server/common/model/genesys/AllAcqBreeding.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/AllAcqCollect.java → src/main/java/org/genesys2/server/common/model/genesys/AllAcqCollect.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/AllAcqExchange.java → src/main/java/org/genesys2/server/common/model/genesys/AllAcqExchange.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/AllEnvironment.java → src/main/java/org/genesys2/server/common/model/genesys/AllEnvironment.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/ExperimentTrait.java → src/main/java/org/genesys2/server/common/model/genesys/ExperimentTrait.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 public class ExperimentTrait {
 	private long experimentId;

src/main/java/org/genesys2/rest/common/model/genesys/Metadata.java → src/main/java/org/genesys2/server/common/model/genesys/Metadata.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 // Generated Apr 24, 2013 10:08:59 AM by Hibernate Tools 4.0.0
 

src/main/java/org/genesys2/rest/common/model/genesys/MetadataMethod.java → src/main/java/org/genesys2/server/common/model/genesys/MetadataMethod.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import java.io.Serializable;
 

src/main/java/org/genesys2/rest/common/model/genesys/Method.java → src/main/java/org/genesys2/server/common/model/genesys/Method.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import javax.persistence.Column;
 import javax.persistence.Entity;

src/main/java/org/genesys2/rest/common/model/genesys/Parameter.java → src/main/java/org/genesys2/server/common/model/genesys/Parameter.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import javax.persistence.Column;
 import javax.persistence.Entity;
@@ -25,7 +25,7 @@ import javax.persistence.JoinColumn;
 import javax.persistence.ManyToOne;
 import javax.persistence.Table;
 
-import org.genesys2.rest.common.model.impl.Crop;
+import org.genesys2.server.common.model.impl.Crop;
 
 @Entity
 @Table(name = "parameters")

src/main/java/org/genesys2/rest/common/model/genesys/Taxonomy.java → src/main/java/org/genesys2/server/common/model/genesys/Taxonomy.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import java.text.MessageFormat;
 

src/main/java/org/genesys2/rest/common/model/genesys/TraitCode.java → src/main/java/org/genesys2/server/common/model/genesys/TraitCode.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model.genesys;
+package org.genesys2.server.common.model.genesys;
 
 import java.text.MessageFormat;
 import java.util.ArrayList;

src/main/java/org/genesys2/rest/common/model/impl/ActivityPost.java → src/main/java/org/genesys2/server/common/model/impl/ActivityPost.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.impl;
+package org.genesys2.server.common.model.impl;
 
 import java.util.Calendar;
 
@@ -25,7 +25,7 @@ import javax.persistence.Table;
 import javax.persistence.Temporal;
 import javax.persistence.TemporalType;
 
-import org.genesys2.rest.common.model.BusinessModel;
+import org.genesys2.server.common.model.BusinessModel;
 import org.hibernate.search.annotations.Field;
 import org.hibernate.search.annotations.Indexed;
 import org.hibernate.search.annotations.Store;

src/main/java/org/genesys2/rest/common/model/impl/Article.java → src/main/java/org/genesys2/server/common/model/impl/Article.java

@@ -15,7 +15,7 @@
  **/
 
 
-package org.genesys2.rest.common.model.impl;
+package org.genesys2.server.common.model.impl;
 
 import java.util.Calendar;
 
@@ -26,7 +26,7 @@ import javax.persistence.Table;
 import javax.persistence.Temporal;
 import javax.persistence.TemporalType;
 
-import org.genesys2.rest.common.model.BusinessModel;
+import org.genesys2.server.common.model.BusinessModel;
 import org.hibernate.search.annotations.Field;
 import org.hibernate.search.annotations.Indexed;
 import org.hibernate.search.annotations.Store;

src/main/java/org/genesys2/rest/common/model/impl/ColumnGroups.java → src/main/java/org/genesys2/server/common/model/impl/ColumnGroups.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.impl;
+package org.genesys2.server.common.model.impl;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/org/genesys2/rest/common/model/impl/Country.java → src/main/java/org/genesys2/server/common/model/impl/Country.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/
 
-package org.genesys2.rest.common.model.impl;
+package org.genesys2.server.common.model.impl;
 
 import java.text.MessageFormat;
 

src/main/java/org/genesys2/rest/common/model/impl/Crop.java → src/main/java/org/genesys2/server/common/model/impl/Crop.java

@@ -14,7 +14,7 @@
  * limitations under the License.
  **/