Descriptors, datasets

src/main/java/org/crophub/rest/common/model/impl/DataSet.java

@@ -32,15 +32,25 @@ import org.crophub.rest.common.model.BusinessModel;
 public class DataSet extends BusinessModel {
 	private static final long serialVersionUID = 4562288873039057125L;
 
+	@ManyToOne(cascade = {}, optional = true)
 	private License license;
 
+	@Column(nullable = false, length = 500)
 	private String name;
+
+	@Lob
+	private String description;
+
+	@Column(length = 500)
 	private String source;
+
+	@Lob
 	private String headers;
+
+	@Lob
 	private String mapping;
 	private Date uploadDate;
 
-	@ManyToOne(cascade = {}, optional = true)
 	public License getLicense() {
 		return license;
 	}
@@ -49,7 +59,6 @@ public class DataSet extends BusinessModel {
 		this.license = license;
 	}
 
-	@Column(nullable = false, length = 500)
 	public String getName() {
 		return name;
 	}
@@ -58,6 +67,14 @@ public class DataSet extends BusinessModel {
 		this.name = name;
 	}
 
+	public String getDescription() {
+		return description;
+	}
+
+	public void setDescription(String description) {
+		this.description = description;
+	}
+
 	public Date getUploadDate() {
 		return uploadDate;
 	}
@@ -66,7 +83,6 @@ public class DataSet extends BusinessModel {
 		this.uploadDate = uploadDate;
 	}
 
-	@Column(length = 500)
 	public String getSource() {
 		return source;
 	}
@@ -77,10 +93,9 @@ public class DataSet extends BusinessModel {
 
 	/**
 	 * Gets list of headers in source file
-	 *
+	 * 
 	 * @return
 	 */
-	@Lob
 	public String getHeaders() {
 		return headers;
 	}
@@ -91,10 +106,9 @@ public class DataSet extends BusinessModel {
 
 	/**
 	 * Data mapping info
-	 *
+	 * 
 	 * @return
 	 */
-	@Lob
 	public String getMapping() {
 		return mapping;
 	}
@@ -105,8 +119,6 @@ public class DataSet extends BusinessModel {
 
 	@Override
 	public String toString() {
-		return MessageFormat.format(
-				"DataSet id={0,number,#} date={1,date,dd/MM/yyyy} name={2}",
-				id, uploadDate, name);
+		return MessageFormat.format("DataSet id={0,number,#} date={1,date,dd/MM/yyyy} name={2}", id, uploadDate, name);
 	}
 }

src/main/java/org/crophub/rest/common/model/impl/Descriptor.java

@@ -34,10 +34,13 @@ import org.crophub.rest.common.model.BusinessModel;
 @Table(name="descriptor")
 public class Descriptor extends BusinessModel {
 	private static final long serialVersionUID = 3832200593904442940L;
+	
+	
+	@Column(nullable = false, length = 500)
 	private String name;
+	@Lob
 	private String description;
 
-	@Column(nullable = false, length = 500)
 	public String getName() {
 		return name;
 	}
@@ -46,7 +49,6 @@ public class Descriptor extends BusinessModel {
 		this.name = name;
 	}
 
-	@Lob
 	public String getDescription() {
 		return description;
 	}

src/main/java/org/crophub/rest/common/model/impl/SparseData.java

@@ -39,12 +39,18 @@ import org.hibernate.annotations.Index;
 		@Index(columnNames = { "descriptorId" }, name = "descriptor_SPARSEDATA") })
 public class SparseData extends BusinessModel {
 	private static final long serialVersionUID = -2142036544458439223L;
+	@OrderColumn
 	private long sparseEntryId;
+	@OrderColumn
 	private long descriptorId;
+	@Column(nullable = false, length = 500)
 	private String value;
+	
+	@ManyToOne(cascade = {}, optional = true)
+	@JoinColumn(name = "stringId")
 	private SparseString sparseString;
 
-	@OrderColumn
+	
 	public long getSparseEntryId() {
 		return sparseEntryId;
 	}
@@ -53,7 +59,6 @@ public class SparseData extends BusinessModel {
 		this.sparseEntryId = sparseEntryId;
 	}
 
-	@OrderColumn
 	public long getDescriptorId() {
 		return descriptorId;
 	}
@@ -62,7 +67,6 @@ public class SparseData extends BusinessModel {
 		this.descriptorId = descriptorId;
 	}
 
-	@Column(nullable = false, length = 500)
 	public String getValue() {
 		return value;
 	}
@@ -71,8 +75,6 @@ public class SparseData extends BusinessModel {
 		this.value = value;
 	}
 
-	@ManyToOne(cascade = {}, optional = true)
-	@JoinColumn(name = "stringId")
 	public SparseString getSparseString() {
 		return sparseString;
 	}

src/main/java/org/crophub/rest/common/model/impl/SparseEntry.java

@@ -32,10 +32,11 @@ import org.crophub.rest.common.model.BusinessModel;
 @Table(name = "sparseentry")
 public class SparseEntry extends BusinessModel {
 	private static final long serialVersionUID = 2430418022616359050L;
-	private DataSet dataSet;
 
 	@ManyToOne(cascade = {}, optional = false)
 	@JoinColumn(name = "dataSetId", nullable = false)
+	private DataSet dataSet;
+
 	public DataSet getDataSet() {
 		return dataSet;
 	}

src/main/java/org/crophub/rest/common/model/impl/SparseString.java

@@ -33,6 +33,14 @@ import org.crophub.rest.common.model.BusinessModel;
 @Table(name = "sparsestring")
 public class SparseString extends BusinessModel {
 	private static final long serialVersionUID = 5896186555138979311L;
+	
+	@Column
+	private String hash;
+	
+	@Column
+	private int length;
+	
+	@Column(length = 500, nullable = false, updatable = false, unique = true)
 	private String value;
 
 	public SparseString() {
@@ -47,6 +55,7 @@ public class SparseString extends BusinessModel {
 	}
 
 	public void setHash(final int hash) {
+		
 	}
 
 	public int getLength() {
@@ -56,7 +65,6 @@ public class SparseString extends BusinessModel {
 	public void setLength(final int length) {
 	}
 
-	@Column(length = 500, nullable = false, updatable = false, unique = true)
 	public String getValue() {
 		return value;
 	}

src/main/java/org/crophub/rest/common/service/DataService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
+package org.crophub.rest.common.service;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.DataSet;
+
+public interface DataService {
+
+	List<DataSet> list();
+
+	DataSet getDataSet(long dataSetId);
+	
+}

src/main/java/org/crophub/rest/common/service/DescriptorService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
+package org.crophub.rest.common.service;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.Descriptor;
+
+public interface DescriptorService {
+
+	List<Descriptor> list();
+	
+}

src/main/java/org/crophub/rest/common/service/impl/DataServiceImpl.java

+package org.crophub.rest.common.service.impl;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.DataSet;
+import org.crophub.rest.common.persistence.domain.DataSetRepository;
+import org.crophub.rest.common.service.DataService;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Service;
+import org.springframework.transaction.annotation.Transactional;
+
+@Service
+@Transactional(readOnly = true)
+public class DataServiceImpl implements DataService {
+	
+	@Autowired
+	private DataSetRepository dataSetRepository;
+	
+	@Override
+	public List<DataSet> list() {
+		return dataSetRepository.findAll();
+	}
+	
+	@Override
+	public DataSet getDataSet(long dataSetId) {
+		return dataSetRepository.findOne(dataSetId);
+	}
+}

src/main/java/org/crophub/rest/common/service/impl/DescriptorServiceImpl.java

+package org.crophub.rest.common.service.impl;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.Descriptor;
+import org.crophub.rest.common.persistence.domain.DescriptorRepository;
+import org.crophub.rest.common.service.DescriptorService;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Service;
+import org.springframework.transaction.annotation.Transactional;
+
+@Service
+@Transactional(readOnly = true)
+public class DescriptorServiceImpl implements DescriptorService {
+	
+	@Autowired
+	private DescriptorRepository descriptorRepository;
+	
+	@Override
+	public List<Descriptor> list() {
+		return descriptorRepository.findAll();
+	}
+}

src/main/java/org/crophub/rest/servlet/controller/DataSetController.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+package org.crophub.rest.servlet.controller;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.DataSet;
+import org.crophub.rest.common.service.DataService;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Controller;
+import org.springframework.ui.ModelMap;
+import org.springframework.validation.Validator;
+import org.springframework.web.bind.annotation.PathVariable;
+import org.springframework.web.bind.annotation.RequestMapping;
+
+/**
+ * Controller which simply handles *.html requests
+ */
+@Controller
+@RequestMapping("/data")
+public class DataSetController extends BaseController {
+
+	@Autowired
+	private DataService dataService;
+
+	@Autowired
+	private Validator validator;
+
+	@RequestMapping
+	public String index(ModelMap model) {
+		List<DataSet> dataSets = dataService.list();
+		model.addAttribute("dataSets", dataSets);
+		return "/dataset/index";
+	}
+
+	@RequestMapping("/view/{id}")
+	public String view(ModelMap model, @PathVariable(value = "id") long dataSetId) {
+		_logger.debug("Viewing data for " + dataSetId);
+		DataSet dataSet=dataService.getDataSet(dataSetId);
+		model.addAttribute("dataSet", dataSet);
+		return "/dataset/view";
+	}
+
+}

src/main/java/org/crophub/rest/servlet/controller/DescriptorController.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+package org.crophub.rest.servlet.controller;
+
+import java.util.List;
+
+import org.crophub.rest.common.model.impl.Descriptor;
+import org.crophub.rest.common.service.DescriptorService;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Controller;
+import org.springframework.ui.ModelMap;
+import org.springframework.validation.Validator;
+import org.springframework.web.bind.annotation.RequestMapping;
+
+/**
+ * Controller which simply handles *.html requests
+ */
+@Controller
+@RequestMapping("/descriptors")
+public class DescriptorController extends BaseController {
+
+	@Autowired
+	private DescriptorService descriptorService;
+
+	@Autowired
+	private Validator validator;
+
+	@RequestMapping
+	public String index(ModelMap model) {
+		List<Descriptor> descriptors = descriptorService.list();
+		_logger.info("Got " + descriptors.size() + " descriptors");
+		model.addAttribute("descriptors", descriptors);
+		return "/descr/index";
+	}
+	
+}

src/main/webapp/WEB-INF/jsp/dataset/index.jsp

+<!DOCTYPE html>
+
+<%@include file="../init.jsp"%>
+
+<html>
+<head>
+    <%@include file="../head-init.jsp"%>
+
+    <title><spring:message code="sample.message.index.title"/></title>
+
+    <link type="text/css" href="/html/css/jquery-ui.css" rel="stylesheet"/>
+    <link type="text/css" href="/html/css/jquery.dataTables.css" rel="stylesheet"/>
+
+    <%--Fallback for older browsers--%>
+    <script type="text/javascript" src="/html/js/json2.js"></script>
+
+    <script type="text/javascript" src="/html/js/globalize.js"></script>
+    <script type="text/javascript" src="/html/js/jquery-ui.min.js"></script>
+    <script type="text/javascript" src="/html/js/jquery.dataTables.js"></script>
+    <script type="text/javascript" src="/html/js/handlebars.js"></script>
+    <script type="text/javascript" src="/html/js/bootstrap.min.js"></script>
+    <script type="text/javascript" src="/html/js/main.js"></script>
+
+</head>
+<body>
+    <div class="container">
+    <div id="header">
+        <div class="page-header clearfix">
+
+            <h4 class="pull-left"><spring:message code="sample.message.welcome"/></h4>
+
+            <div class="navbar pull-right">
+            <div class="nav-collapse">
+                <ul class="nav">
+                    <li class="dropdown">
+                        <a class="dropdown-toggle" data-toggle="dropdown" title="<spring:message code="sample.message.change.locale"/>">
+                            <spring:message code="sample.message.current.locale"/>
+                            <b class="caret"></b>
+                        </a>
+                        <ul class="dropdown-menu">
+                            <li><a href="?lang=en"><spring:message code="sample.message.locale.en"/></a></li>
+                            <li><a href="?lang=ru"><spring:message code="sample.message.locale.ru"/></a></li>
+                        </ul>
+                    </li>
+                </ul>
+            </div>
+            </div>
+        </div>
+    </div>
+
+    <div id="content">
+        <div class="page-header">
+            <a id="show-users" href="#" class="btn">Users</a>
+        </div>
+
+        <div id="dialog"></div>
+
+        <c:forEach items="${dataSets}" var="dataSet" varStatus="status">
+	        <h3><a href="/data/view/${dataSet.id}"><c:out value="${dataSet.name}" /></a></h3>
+	        <p><c:out value="${dataSet.uploadDate}" /></p>
+        </c:forEach>
+
+    </div>
+    </div>
+</body>
+</html>
\ No newline at end of file

src/main/webapp/WEB-INF/jsp/dataset/view.jsp

+<!DOCTYPE html>
+<%@include file="../init.jsp"%>
+<html>
+<head>
+<%@include file="../head-init.jsp"%>
+<title><spring:message code="sample.message.index.title" /></title>
+<link type="text/css" href="/html/css/jquery-ui.css" rel="stylesheet" />
+<link type="text/css" href="/html/css/jquery.dataTables.css" rel="stylesheet" />
+<%--Fallback for older browsers--%>
+<script type="text/javascript" src="/html/js/json2.js"></script>
+<script type="text/javascript" src="/html/js/globalize.js"></script>
+<script type="text/javascript" src="/html/js/jquery-ui.min.js"></script>
+<script type="text/javascript" src="/html/js/jquery.dataTables.js"></script>
+<script type="text/javascript" src="/html/js/handlebars.js"></script>
+<script type="text/javascript" src="/html/js/bootstrap.min.js"></script>
+<script type="text/javascript" src="/html/js/main.js"></script>
+</head>
+<body>
+	<div class="container">
+		<div id="header">
+			<div class="page-header clearfix">
+				<h4 class="pull-left">
+					<spring:message code="sample.message.welcome" />
+				</h4>
+				<div class="navbar pull-right">
+					<div class="nav-collapse">
+						<ul class="nav">
+							<li class="dropdown"><a class="dropdown-toggle" data-toggle="dropdown" title="<spring:message code="sample.message.change.locale"/>"> <spring:message code="sample.message.current.locale" /> <b class="caret"></b>
+							</a>
+								<ul class="dropdown-menu">
+									<li><a href="?lang=en"><spring:message code="sample.message.locale.en" /></a></li>
+									<li><a href="?lang=ru"><spring:message code="sample.message.locale.ru" /></a></li>
+								</ul></li>
+						</ul>
+					</div>
+				</div>
+			</div>
+		</div>
+		<div id="content">
+			<div class="page-header">
+				<a id="show-users" href="#" class="btn">Users</a>
+			</div>
+			<div id="dialog"></div>
+
+			<p>Showing data now!</p>
+
+			<a href="..">Go back!</a>
+
+			<h3>
+				<a href="/data/view/${dataSet.id}"><c:out value="${dataSet.name}" /></a>
+			</h3>
+			<p>
+				<c:out value="${dataSet.uploadDate}" />
+			</p>
+			<div>
+				<c:out value="${dataSet.description}" escapeXml="false" />
+			</div>
+		</div>
+	</div>
+</body>
+</html>
\ No newline at end of file

src/main/webapp/WEB-INF/jsp/descr/index.jsp

+<!DOCTYPE html>
+
+<%@include file="../init.jsp"%>
+
+<html>
+<head>
+    <%@include file="../head-init.jsp"%>
+
+    <title><spring:message code="sample.message.index.title"/></title>
+
+    <link type="text/css" href="/html/css/jquery-ui.css" rel="stylesheet"/>
+    <link type="text/css" href="/html/css/jquery.dataTables.css" rel="stylesheet"/>
+
+    <%--Fallback for older browsers--%>
+    <script type="text/javascript" src="/html/js/json2.js"></script>
+
+    <script type="text/javascript" src="/html/js/globalize.js"></script>
+    <script type="text/javascript" src="/html/js/jquery-ui.min.js"></script>
+    <script type="text/javascript" src="/html/js/jquery.dataTables.js"></script>
+    <script type="text/javascript" src="/html/js/handlebars.js"></script>
+    <script type="text/javascript" src="/html/js/bootstrap.min.js"></script>
+    <script type="text/javascript" src="/html/js/main.js"></script>
+
+</head>
+<body>
+    <div class="container">
+    <div id="header">
+        <div class="page-header clearfix">
+
+            <h4 class="pull-left"><spring:message code="sample.message.welcome"/></h4>
+
+            <div class="navbar pull-right">
+            <div class="nav-collapse">
+                <ul class="nav">
+                    <li class="dropdown">
+                        <a class="dropdown-toggle" data-toggle="dropdown" title="<spring:message code="sample.message.change.locale"/>">
+                            <spring:message code="sample.message.current.locale"/>
+                            <b class="caret"></b>
+                        </a>
+                        <ul class="dropdown-menu">
+                            <li><a href="?lang=en"><spring:message code="sample.message.locale.en"/></a></li>