Cleanup, license information

src/main/java/org/genesys2/server/ServiceEndpoints.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server;
 
 public interface ServiceEndpoints {

src/main/java/org/genesys2/server/exception/ApplicationException.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.exception;
 
 public class ApplicationException extends Exception {

src/main/java/org/genesys2/server/exception/AuthorizationException.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.exception;
 
 public class AuthorizationException extends ApplicationException {

src/main/java/org/genesys2/server/exception/NoSuchTokenException.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.exception;
 
 public class NoSuchTokenException extends RuntimeException {
@@ -8,4 +25,4 @@ public class NoSuchTokenException extends RuntimeException {
         super(message);
     }
 
-}
\ No newline at end of file
+}

src/main/java/org/genesys2/server/lucene/genesys/AccessionBridge.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.lucene.genesys;
 
 import org.apache.commons.logging.Log;

src/main/java/org/genesys2/server/lucene/genesys/FaoInstituteBridge.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.lucene.genesys;
 
 import org.apache.commons.logging.Log;

src/main/java/org/genesys2/server/lucene/genesys/StringDocument.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.lucene.genesys;
 
 import org.apache.commons.lang.StringUtils;

src/main/java/org/genesys2/server/model/impl/AccessionIdentifier3.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.model.impl;
 
 public interface AccessionIdentifier3 {

src/main/java/org/genesys2/server/model/impl/FaoInstitute.java

@@ -31,7 +31,6 @@ import javax.persistence.UniqueConstraint;
 import org.genesys2.server.lucene.genesys.FaoInstituteBridge;
 import org.genesys2.server.model.EntityId;
 import org.hibernate.annotations.Index;
-import org.hibernate.search.annotations.Boost;
 import org.hibernate.search.annotations.ClassBridge;
 import org.hibernate.search.annotations.DocumentId;
 import org.hibernate.search.annotations.Field;
@@ -42,7 +41,7 @@ import org.hibernate.search.annotations.Store;
 @Table(name = "faoinstitute", uniqueConstraints = @UniqueConstraint(columnNames = { "code" }))
 @org.hibernate.annotations.Table(appliesTo = "faoinstitute", indexes = { @Index(columnNames = { "code" }, name = "code_FAOINSTITUTE") })
 @Indexed
-@ClassBridge(name = "body", impl = FaoInstituteBridge.class, boost = @Boost(10))
+@ClassBridge(name = "body", impl = FaoInstituteBridge.class)
 public class FaoInstitute extends GeoEntity implements EntityId, java.io.Serializable {
 
 	/**

src/main/java/org/genesys2/server/service/GenesysFilterService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service;
 
 import java.util.List;

src/main/java/org/genesys2/server/service/LuceneIndexer.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service;
 
 public interface LuceneIndexer {

src/main/java/org/genesys2/server/service/OrganizationService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service;
 
 import org.genesys2.server.model.impl.Organization;

src/main/java/org/genesys2/server/service/SearchService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service;
 
 import org.hibernate.search.SearchException;

src/main/java/org/genesys2/server/service/TraitService.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service;
 
 import java.util.List;

src/main/java/org/genesys2/server/service/impl/ContentSanitizer.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service.impl;
 
 import org.apache.commons.logging.Log;

src/main/java/org/genesys2/server/service/impl/GenesysFilterServiceImpl.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service.impl;
 
 import java.util.ArrayList;

src/main/java/org/genesys2/server/service/impl/LuceneIndexerImpl.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service.impl;
 
 import javax.persistence.EntityManagerFactory;
@@ -68,4 +85,4 @@ public class LuceneIndexerImpl implements LuceneIndexer {
 		}
 		LOG.info("Finished indexing after: " + timer.getTime() + "ms");
 	}
-}
\ No newline at end of file
+}

src/main/java/org/genesys2/server/service/impl/LucenePage.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service.impl;
 
 import java.util.Iterator;

src/main/java/org/genesys2/server/service/impl/SearchServiceImpl.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.service.impl;
 
 import java.util.List;

src/main/java/org/genesys2/server/servlet/controller/ActivityPostController.java

+/**
+ * Copyright 2013 Global Crop Diversity Trust
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ **/
+
+
 package org.genesys2.server.servlet.controller;
 
 import java.util.Calendar;