Firehose: Fixed JPA listener for deleteAll(..)

src/main/java/org/genesys2/server/component/firehose/FirehoseJPAListener.java

@@ -67,6 +67,7 @@ public class FirehoseJPAListener implements InitializingBean {
 	@Override
 	public void afterPropertiesSet() throws Exception {
 		includedClasses = Set.copyOf(includedClasses); // make it immutable
+		LOG.warn("Listening for commits on: {}", includedClasses);
 	}
 
 	public void setIncludedClasses(Set<Class<?>> includedClasses) {
@@ -169,7 +170,7 @@ public class FirehoseJPAListener implements InitializingBean {
 			Date timestamp = new Date();
 
 			if (toRemove instanceof Iterable<?>) {
-				if (isIncluded((Iterable<?>) toRemove)) {
+				if (isIncludedIterable((Iterable<?>) toRemove)) {
 					LOG.debug("JPA afterRemove: {} {}", joinPoint.toLongString(), joinPoint.getTarget());
 					List<FirehoseEvent> firehoseEventList = createFirehoseEvents((Iterable<?>) toRemove, timestamp, EventType.DELETE);
 					// send events!

src/main/java/org/genesys2/server/service/worker/AccessionUploader.java

@@ -826,7 +826,7 @@ public class AccessionUploader implements InitializingBean {
 		LOG.debug("Processed incoming JSON for {} accessions in {}ms", identifiers.size(), stopWatch.getTime());
 
 		List<Accession> existingAccessions = accessionRepository.find(! institute.hasUniqueAcceNumbs(), toBeDeleted);
-		LOG.debug("Have {} accessions for update and {} exist in {}ms", toBeDeleted.size(), existingAccessions.size(), stopWatch.getTime());
+		LOG.debug("Have {} accessions for removal and {} exist in {}ms", toBeDeleted.size(), existingAccessions.size(), stopWatch.getTime());
 
 		for (Accession deletion: toBeDeleted) {
 			AccessionOpResponse response;

src/main/resources/log4j2.xml

@@ -32,8 +32,9 @@
         <Logger name="org.apache.tomcat.jdbc.pool" level="debug" />
         <Logger name="org.hibernate.engine.jdbc" level="fatal" />
 
-        <Logger name="org.genesys2.server.component.elastic" level="debug" />
-        <Logger name="org.genesys2.server.component.firehose" level="debug" />
+        <!-- <Logger name="org.genesys2.server.component.elastic" level="debug" /> -->
+        <!-- <Logger name="org.genesys2.server.component.firehose" level="trace" /> -->
+        <!-- <Logger name="org.genesys2.server.service.worker" level="debug" /> -->
 
         <Root level="error">
             <AppenderRef ref="console" />