Commit ddc67f0c authored by Matija Obreza's avatar Matija Obreza

Documentation

parent afb329c6
Accession passport data basics
==============================
Matija Obreza <matija.obreza@croptrust.org>
December 2015: Documentation commit {buildNumber}
:keywords: genebank documentation, accession passport data
:revnumber: {projectVersion}
:doctype: book
:toc: left
......@@ -12,13 +14,13 @@ December 2015: Documentation commit {buildNumber}
:pygments-linenums-mode: table
[[intro]]
Introduction
------------
This manual contains basic information on commonly used standards for accession
documentation and formats for data exchange. It documents Genesys extensions to
the standards.
documentation and formats for data exchange.
https://www.genesys-pgr.org[Genesys PGR] (Plant Genetic Resources) is a free online global portal accessible at
link:$$https://www.genesys-pgr.org$$[www.genesys-pgr.org]
......@@ -32,6 +34,15 @@ The manual introduces
* <<mcpd-genesys,Genesys extensions>> to MCPD
* <<other-standards,Other standards>> relevant to accession documentation
== Acknowledgements
Special thanks go to Michael Mackay, Angela Marcela Hernandez, Edwin Rojas for their
input, feedback and support.
You can contact {author} at {email}.
include::sections/accedoc.adoc[]
include::sections/wiews.adoc[]
include::sections/mcpd.adoc[]
......
......@@ -36,8 +36,10 @@ maintained by the genebank.
*Sequence number* is assigned manually or by a computer system to ensure there are
no duplicates. Some institutes prefer to zero-pad the number `00000102`.
The *suffix* allows differentiating samples of the same original material. The
exact meaning of the suffix is different for every institute.
The *suffix* allows differentiating samples of the same original material. A suffix
might be used after making a selection from the original accession (e.g. a
single seed descent) to be maintained as a separate sample.
The exact meaning of the suffix is different for every institute.
[cols="1,1,1,2", options="header"]
.Example accession numbers
......@@ -92,7 +94,9 @@ to obtain material from either collection.
Accession genus, species, species author, subtaxon and subtaxon authority are usually
known, but are subject to change after expert identification or change in taxonomic system.
https://npgsweb.ars-grin.gov/gringlobal/taxon/abouttaxonomy.aspx[GRIN Taxonomy for Plants] and the Mansfeld database can serve for validating accession taxa.
https://npgsweb.ars-grin.gov/gringlobal/taxon/abouttaxonomy.aspx[GRIN Taxonomy for Plants] and
the http://mansfeld.ipk-gatersleben.de/[Mansfeld's World Database of Agriculture and Horticultural Crops] can serve for validating accession taxa.
[[accedoc-storage]]
=== Storage and maintenance
......
......@@ -107,6 +107,9 @@ consistent manner.
When the institute is not known, the identifier should be preceeded by a colon.
|<<mcpd-wiews,DUPLSITE>>|FAO WIEWS code of the institute(s) where a safety duplicate of the accession is maintained.
The WIEWS institute code for Svalbard Global Seed Vault is NOR051.
|DUPLINSTNAME|Name of the institute where a safety duplicate of the accession is maintained.
|<<mcpd-storage,STORAGE>>|Type of germplasm storage. If germplasm is maintained under different types of storage,
multiple choices are alllowed, separated by a semicolon (e.g. `20;30`).
......@@ -123,7 +126,6 @@ Values for `INSTCODE`, `COLLCODE`, `BREDCODE`, `DONORCODE` and `DUPLSITE` must b
<<wiews-instcode,FAO WIEWS codes>> of institutes.
[[mcpd-sampstat]]
==== Biological status of accession
......
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