Commits · 0b9757c63936c1bb9e5f262ccb35aca280d9e7f5 · Genesys PGR / Genesys Backend

22 Dec, 2018 11 commits
- Reorganized packages for better Spring auto-configuration · 0b9757c6
  Matija Obreza authored Dec 22, 2018
  
  0b9757c6
- Cleanup · bdf9cd88
  Matija Obreza authored Dec 22, 2018
  
  bdf9cd88
- Subset API · 2bd49d09
  Matija Obreza authored Dec 22, 2018
  
  2bd49d09
- Defer relinking of AccessionRefs for Datasets and Subsets · 8f28e9c9
  Matija Obreza authored Dec 21, 2018
  
  8f28e9c9
- Reworked AccessionRefs for subsets and datasets · d028e392
  Matija Obreza authored Dec 20, 2018
```
- No longer an embedded collection
- Don't deepLoad when starting work in @Transactional
```
  d028e392
- Merge branch '388-kpi-executions-acl' into 'master' · 665b44af
  Matija Obreza authored Dec 22, 2018
```
Resolve "KPI Executions ACL"

Closes #388

See merge request genesys-pgr/genesys-server!308
```
  665b44af
- Updated KPI Execution · 3e0bea73
  Matija Obreza authored Dec 22, 2018
```
- getExecution doesn't lazy load, use loadExecution
- filterObservations method receives Execution
```
  3e0bea73
- KPI Executions ACL · 8b5f7fed
  Maxym Borodenko authored Dec 21, 2018 and Matija Obreza committed Dec 22, 2018
  
  8b5f7fed
- Merge branch '391-mcpd-excel-include-lastupdated' into 'master' · f1c534b1
  Matija Obreza authored Dec 22, 2018
```
Resolve "MCPD Excel: Include LASTUPDATED"

Closes #391

See merge request genesys-pgr/genesys-server!309
```
  f1c534b1
- Merge branch 'ui-152-cms-with-transifex' into 'master' · c1e22c09
  Matija Obreza authored Dec 22, 2018
```
Added api endpoint for transifex posting/fetching/deleting

See merge request genesys-pgr/genesys-server!310
```
  c1e22c09
- Excel: using common date format · d2399237
  Matija Obreza authored Dec 22, 2018
  
  d2399237
21 Dec, 2018 7 commits
- MCPD Excel: Included LASTMODIFIED column · 96a9b671
  Maxym Borodenko authored Dec 21, 2018
  
  96a9b671
- added api endpoint for transifex posting/fetching/deleting · 4d40a724
  Viacheslav Pavlov authored Dec 21, 2018
  
  4d40a724
- Merge branch '379-kpi-api-v1-observed-value-on-specific-date' into 'master' · f1d2b495
  Matija Obreza authored Dec 21, 2018
```
Resolve "KPI API v1: Observed value on specific date"

Closes #379

See merge request genesys-pgr/genesys-server!301
```
  f1d2b495
- Reduce test logging · 8255583b
  Matija Obreza authored Dec 21, 2018
  
  8255583b
- Return nice observations JSON, list names of available names of executions at /kpi/observations · fc0029ee
  Matija Obreza authored Dec 21, 2018
  
  fc0029ee
- Reduce log noise · 5632c427
  Matija Obreza authored Dec 21, 2018
  
  5632c427
- KPI API v1: List values observed on specific date · 2bd61ccd
  Maxym Borodenko authored Dec 18, 2018 and Matija Obreza committed Dec 21, 2018
  
  2bd61ccd
20 Dec, 2018 4 commits
- Merge branch '390-multiple-matching-descriptors' into 'master' · f8668409
  Maxym Borodenko authored Dec 20, 2018
```
Resolve "Multiple matching descriptors"

Closes #390

See merge request genesys-pgr/genesys-server!307
```
  f8668409
- Return multiple matching descriptors · 1b9960dc
  Matija Obreza authored Dec 20, 2018
```
- With permission checks
```
  1b9960dc
- Added dataset service checks for published state · 7ad39c7a
  Matija Obreza authored Dec 20, 2018
  
  7ad39c7a
- Fix: lookupMatchingAccessions · 94a1b99c
  Matija Obreza authored Dec 20, 2018
```
- handle blank strings better
- Accessions with DOI in Genesys didn't get added to lookup maps
```
  94a1b99c
19 Dec, 2018 9 commits
- Merge branch '389-export-trait-data-in-catalog-dataset-template' into 'master' · fe7e8af7
  Matija Obreza authored Dec 19, 2018
```
Resolve "Export trait data in Catalog dataset template"

Closes #389

See merge request genesys-pgr/genesys-server!306
```
  fe7e8af7
- Fix: make ref lookups much, much, much faster · e9d446f8
  Matija Obreza authored Dec 19, 2018
  
  e9d446f8
- Export existing trait data in Catalog Excel format · f8a25b78
  Matija Obreza authored Dec 19, 2018
  
  f8a25b78
- Merge branch '387-kpi-group-by-with-null' into 'master' · 42c747f2
  Matija Obreza authored Dec 19, 2018
```
Resolve "KPI group by with null"

Closes #387

See merge request genesys-pgr/genesys-server!305
```
  42c747f2
- KPI grouping for `null` values · 55b1a1c4
  Matija Obreza authored Dec 19, 2018
```
- JPA requires explicit left join
- executionGroup.link introduced
```
  55b1a1c4
- Merge branch 'ui-146-dataset-editor-rescan-accessionrefs-for-matching-accessions' into 'master' · 1130bbf5
  Matija Obreza authored Dec 19, 2018
```
Added api endpoint for rematching dataset accessions

See merge request genesys-pgr/genesys-server!304
```
  1130bbf5
- Added api endpoint for rematching dataset accessions · 86d8c706
  Viacheslav Pavlov authored Dec 18, 2018 and Matija Obreza committed Dec 19, 2018
  
  86d8c706
- Merge branch '382-kpi-group-by-parameter-properties' into 'master' · 35d3692f
  Matija Obreza authored Dec 18, 2018
```
Resolve "KPI group by Parameter properties"

Closes #382

See merge request genesys-pgr/genesys-server!302
```
  35d3692f
- KPI Execution supports `group by` as additional dimensions · 7a7c66c9
  Matija Obreza authored Dec 18, 2018
```
- alias field added
```
  7a7c66c9
18 Dec, 2018 4 commits
- KPI Execution allows for joining collections and summarizing on their properties · 3af55efa
  Matija Obreza authored Dec 17, 2018
  
  3af55efa
- KPI entities are SelfCleaning · f644e7d3
  Matija Obreza authored Dec 18, 2018
```
- String properties trimmed to null
```
  f644e7d3
- Merge branch '385-applicationstartup-actions-to-admin-actions' into 'master' · 3e8083ff
  Matija Obreza authored Dec 18, 2018
```
Resolve "ApplicationStartup actions to /admin actions"

Closes #385

See merge request genesys-pgr/genesys-server!303
```
  3e8083ff
- ApplicationStartup actions to /admin actions · d5d8126c
  Maxym Borodenko authored Dec 18, 2018
  
  d5d8126c
17 Dec, 2018 5 commits
- Merge branch '377-account-email-validation' into 'master' · bd6cb473
  Matija Obreza authored Dec 17, 2018
```
Account email validation

Closes #377

See merge request genesys-pgr/genesys-server!297
```
  bd6cb473
- Merge branch '378-jsp-download-pdci-from-explore' into 'master' · b164efef
  Matija Obreza authored Dec 17, 2018
```
Resolve "JSP: Download PDCI from /explore"

Closes #378

See merge request genesys-pgr/genesys-server!299
```
  b164efef
- PDCI download: include INSTCODE, ACCENUMB, GENUS · 3ad1436f
  Matija Obreza authored Dec 17, 2018
```
- Updated template
```
  3ad1436f
- Download PDCI as Excel for matching accessions · 8be56d09
  Maxym Borodenko authored Dec 17, 2018 and Matija Obreza committed Dec 17, 2018
```
- JSP: download from /explore
- APIv1: /acn/download?pdci
```
  8be56d09
- Account email validation · 3dfae110
  Viacheslav Pavlov authored Dec 10, 2018 and Matija Obreza committed Dec 17, 2018
```
- changed onEmailValidated redirect url
- changed validateemail.jsp "key" field to use jstl for input value
- added account-email-validated article
- changed liquibase article generation to auto.createContent
```
  3dfae110