DisplayPage.tsx 13.3 KB
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import * as React from 'react';
import {connect} from 'react-redux';
import {bindActionCreators} from 'redux';
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import { translate } from 'react-i18next';
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// Actions
import { loadAccession } from 'actions/accessions';
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import {addAccessionToMyList, removeAccessionFromMyList} from 'actions/user';
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// Models
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import AccessionDetails from 'model/AccessionDetails';
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// UI
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import { Link } from 'react-router-dom';
import PrettyDate from 'ui/common/time/PrettyDate';
import PageLayout, { PageContents, MainSection, PageSection } from 'ui/layout/PageLayout';
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import ContentHeader from 'ui/common/heading/ContentHeader';
import Loading from 'ui/common/Loading';
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import { Properties, PropertiesItem } from 'ui/common/Properties';
import DOI from 'ui/common/DOI';
import { ExternalLink } from 'ui/common/Links';
import SciName from 'ui/genesys/SciName';
import { ScrollToTopOnMount } from 'ui/common/page/scrollers';
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import ReduxCheckbox from 'ui/common/checkbox';
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import CropChips from 'ui/genesys/crop/CropChips';
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import LocationMap from 'ui/common/LocationMap';
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import {CountryLink, DatasetLink, InstituteLink, SubsetLink} from 'ui/genesys/Links';
import PropertiesCard from 'ui/common/PropertiesCard';
import GridLayout from 'ui/layout/GridLayout';
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import McpdDate from 'ui/common/time/McpdDate';
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import PdciTable from './c/PdciTable';
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interface IBrowsePageProps extends React.ClassAttributes<any> {
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  t: any;
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  uuid: string;
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  doi: string; // DOI comes from the route without the '10.'
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  accession: AccessionDetails;
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  error: any;
  loadAccession: any;
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  accessions: any;
  addAccessionToMyList: any;
  removeAccessionFromMyList: any;
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}

class BrowsePage extends React.Component<IBrowsePageProps, any> {

  protected static needs = [
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    ({ params: { uuid, doi } }) => {
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        return doi ? loadAccession({ doi: `10.${doi}` }) :  loadAccession({ uuid });
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    },
  ];

  constructor(props: IBrowsePageProps, context: any) {
      super(props, context);
  }

  public componentWillMount() {
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    const { doi, uuid, loadAccession } = this.props;
    const accession = this.props.accession ? this.props.accession.details : null;

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    const theDoi = `10.${doi}`;
    if (doi && (! accession || theDoi !== accession.doi)) {
      loadAccession({ doi: theDoi });
    }
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    if (uuid && (! accession || uuid !== accession.uuid)) {
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      loadAccession({ uuid });
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    }
  }

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  private onCheckboxChange = (event, checked) => {
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      const {accession: {details: accession}, addAccessionToMyList, removeAccessionFromMyList} = this.props;
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      if (checked) {
          addAccessionToMyList(accession.uuid);
      } else {
          removeAccessionFromMyList(accession.uuid);
        }
  }

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  public render() {
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    const { t, error, uuid, doi, accessions } = this.props;
    const {details: accession, pdci, datasets, subsets} = this.props.accession ?
      this.props.accession
      :
      {details: null, pdci: null, datasets: null, subsets: null};

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    const  isChecked  =  accession && accessions && accessions.includes(accession.uuid);
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    const theDoi = `10.${doi}`;
    const stillLoading: boolean = ! error && (! accession
      || (doi && accession && accession.doi !== theDoi)
      || (uuid && accession && accession.uuid !== uuid));
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    const hasLatLon = accession && accession.geo && accession.geo.latitude !== null && accession.geo.longitude !== null;

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    return (
      <PageLayout>
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        <ScrollToTopOnMount />
        <ContentHeader title="Accession details" subtitle="Passport data and everything else" />

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        { stillLoading ? <Loading /> :
          <div>
            { error && <div>{ JSON.stringify(error) }</div> }
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            { accession &&
              <PageContents>
                <MainSection title={
                  <div>
                    Accession: { accession.accessionNumber }
                    <div className="float-right">
                        <ReduxCheckbox
                            label={
                                <b>
                                    { isChecked ? `Remove ${accession.accessionNumber} from my list` : `Add ${accession.accessionNumber} to my list` }
                                </b>
                            }
                            input={ {
                                value: isChecked,
                                onChange: this.onCheckboxChange,
                            } }
                        />
                    </div>
                  </div>
                  }
                >
                  <Properties>
                    { accession.doi && <PropertiesItem title="DOI"><DOI noPrefix value={ accession.doi } /></PropertiesItem> }
                    <PropertiesItem title="Accession number">{ accession.accessionNumber }</PropertiesItem>
                    <PropertiesItem title="Holding institute">
                      <InstituteLink to={ accession.institute }>
                        { accession.institute.fullName }
                      </InstituteLink>
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                      <span> &mdash; </span>
                      <CountryLink noflag country={ accession.institute.country }/>
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                    </PropertiesItem>
                    <PropertiesItem title="Institute code">{ accession.institute.code }</PropertiesItem>
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                    <PropertiesItem title="Acquisition date"><McpdDate value={ accession.acquisitionDate } /></PropertiesItem>
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                    { accession.countryOfOrigin && <PropertiesItem title="Country of origin">{ <CountryLink country={ accession.countryOfOrigin }/> }</PropertiesItem> }
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                    { accession.sampStat && <PropertiesItem title="Biological status of accession">{ t(`accession.sampleStatus.${accession.sampStat}`) }</PropertiesItem> }
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                    { accession.storage && accession.storage.length > 0 && <PropertiesItem title="Type of Germplasm storage">
                      { accession.storage.map((storage, i) => (
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                        <div key={ storage } style={ {width: '100%', paddingTop: '.25rem'} }>{ t(`accession.storage.${storage}`) }</div>
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                      )) }
                    </PropertiesItem> }
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                    <PropertiesItem title="Availability for distribution" keepEmpty>{ t(`accession.available.${accession.available}`) }</PropertiesItem>
                    <PropertiesItem title="Availability for distribution under the MLS" keepEmpty>{ t(`accession.available.${accession.mlsStatus}`) }</PropertiesItem>
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                    <PropertiesItem title="Donor institute">{ accession.donorCode }</PropertiesItem>
                    <PropertiesItem title="Donor accession number">{ accession.donorNumb }</PropertiesItem>
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                    { accession.duplSite && accession.duplSite.length > 0 && <PropertiesItem title="Safety duplication institute">
                      { accession.duplSite.map((duplSite, i) => (
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                        <div key={ duplSite } style={ {width: '100%', paddingTop: '.25rem'} }>{ duplSite }</div>
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                      )) }
                    </PropertiesItem> }
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                    { accession.acceUrl && <PropertiesItem title="Accession URL"><ExternalLink link={ accession.acceUrl } /></PropertiesItem> }
                  </Properties>
                </MainSection>
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                <PageSection title="Taxonomy">
                  <Properties>
                    <PropertiesItem title="Genus">{ accession.taxonomy.genus }</PropertiesItem>
                    <PropertiesItem title="Species">
                      { accession.taxonomy.species }
                      { '' }
                      <Link to={ '/a' }>View <i>{ `${accession.taxonomy.genus} ${accession.taxonomy.species}` }</i> at { accession.institute.code }</Link>
                    </PropertiesItem>
                    <PropertiesItem title="Scientific name"><SciName taxa={ accession.taxonomy.taxonNameHtml } /></PropertiesItem>
                    { accession.crop && <PropertiesItem title="Crop name"><CropChips crops={ accession.crop.shortName } /></PropertiesItem> }
                    <PropertiesItem title="Provided crop name">{ accession.cropName }</PropertiesItem>
                  </Properties>
                </PageSection>
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                { accession.donorCode || (accession.aliases && accession.aliases.length > 0) &&
                  <PageSection title="Accession names">
                    <Properties>
                      { accession.donorCode && <PropertiesItem title={ t('accession.alias.DONORNUMB') }>{ accession.donorNumb } { accession.donorCode }</PropertiesItem> }
                      { accession.aliases && accession.aliases.map((alias) => (
                        <PropertiesItem key={ alias.id } title={ t(`accession.alias.${alias.aliasType}`) }>{ alias.name } { alias.usedBy }</PropertiesItem>
                      )) }
                    </Properties>
                  </PageSection>
                }
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                { accession.coll &&
                  <PageSection title="Collecting information">
                    <Properties>
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                      { accession.countryOfOrigin && <PropertiesItem title="Country of origin">{ <CountryLink country={ accession.countryOfOrigin }/> }</PropertiesItem> }
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                      { accession.coll.collDate && <PropertiesItem key="collDate" title={ t(`accession.coll.collDate`) }><McpdDate value={ accession.coll.collDate } /></PropertiesItem> }
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                      { accession.coll &&
                        [ 'collMissId', 'collNumb', 'collSite', 'collSrc' ]
                          .filter((prop) => accession.coll[prop] !== null).map((prop) => (
                          <PropertiesItem key={ prop } title={ t(`accession.coll.${prop}`) }>{ accession.coll[prop] }</PropertiesItem>
                        ))
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                      }
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                      { accession.coll &&
                        [ 'collCode', 'collName' ]
                          .filter((prop) => accession.coll[prop].length).map((prop) => (
                          <PropertiesItem key={ prop } title={ t(`accession.coll.${prop}`) }>{ accession.coll[prop] }</PropertiesItem>
                        ))
                      }
                      { accession.geo &&
                        [ 'latitude', 'longitude', 'datum', 'method', 'uncertainty', 'elevation' ]
                          .filter((prop) => accession.geo[prop] !== null).map((prop) => (
                          <PropertiesItem key={ prop } title={ t(`accession.geo.${prop}`) }>{ accession.geo[prop] }</PropertiesItem>
                        ))
                      }
                    </Properties>

                    { hasLatLon &&
                      <LocationMap
                        location={
                          {
                            id: accession.geo.id,
                            lat: accession.geo.latitude,
                            lng: accession.geo.longitude,
                          }
                        }
                      />
                    }
                  </PageSection>
                }
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                { accession.remarks && accession.remarks.length > 0 && <PageSection title="Remarks">
                  <Properties>
                    { accession.remarks && accession.remarks.map((remark) => (
                      <PropertiesItem key={ remark.id } title={ remark.fieldName }>{ remark.remark }</PropertiesItem>
                    )) }
                  </Properties>
                </PageSection> }
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                { pdci && <PdciTable pdci={ pdci } title="Passport Data Completeness Index"/> }
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                <PageSection title="Metadata">
                  <Properties>
                    <PropertiesItem title="UUID">{ `urn:uuid:${accession.uuid}` }</PropertiesItem>
                    <PropertiesItem title="Permanent URL"><ExternalLink link={ `https://purl.org/germplasm/id/${accession.uuid}` } /></PropertiesItem>
                    <PropertiesItem title="Last updated"><PrettyDate value={ accession.lastModifiedDate } /></PropertiesItem>
                    <PropertiesItem title="Created"><PrettyDate value={ accession.createdDate } /></PropertiesItem>
                  </Properties>
                </PageSection>
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                <GridLayout>
                  { datasets && datasets.length > 0 &&
                  <PropertiesCard
                    small
                    title="Associated datasets"
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                    propertyItemProps={ { keepEmpty: true } }
                    propertiesList={ datasets.map((dataset) => ({ title: 'Dataset', value: <DatasetLink to={ dataset } /> })) }
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                  />
                  }
                  { subsets && subsets.length > 0 &&
                  <PropertiesCard
                    small
                    title="Associated Subsets"
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                    propertyItemProps={ { keepEmpty: true } }
                    propertiesList={ subsets.map((subset) => ({ title: 'Subset', value: <SubsetLink to={ subset } /> })) }
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                  />
                  }
                </GridLayout>
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              </PageContents>
            }
          </div>
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        }
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      </PageLayout>
    );
  }
}

const mapStateToProps = (state, ownProps) => ({
  accession: state.accessions.accession,
  error: state.accessions.accessionError,
  uuid: ownProps.match.params.uuid,
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  doi: ownProps.match.params.doi,
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  accessions: state.user.myList.accessions,
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});

const mapDispatchToProps = (dispatch) => bindActionCreators({
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  addAccessionToMyList,
  removeAccessionFromMyList,
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  loadAccession,
}, dispatch);


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export default connect(mapStateToProps, mapDispatchToProps)(translate()(BrowsePage));