Dataset/Subset display page: rematchAccessions

locales/en/translations.json

@@ -1100,6 +1100,7 @@
       },
       "datasetDisplay": {
         "accessionsEvaluated": "Accessions evaluated",
+        "rematch": "Rematch accessions",
         "contact": "Data provider contact information",
         "creators": "Dataset creators",
         "dataAndResources": "Data and resources",
@@ -1179,6 +1180,7 @@
     "endDate": "Experiment end date"
   }
 }
+
 ,"descriptorlists": {
   "common": {
     "modelName": "Descriptor list",
@@ -1993,7 +1995,8 @@
         "source": "Source"
       },
       "subsetDisplay": {
-        "subsetCreators": "Subset creators"
+        "subsetCreators": "Subset creators",
+        "rematch": "Rematch accessions"
       }
     },
     "f": {

src/datasets/translations.json

@@ -151,6 +151,7 @@
       },
       "datasetDisplay": {
         "accessionsEvaluated": "Accessions evaluated",
+        "rematch": "Rematch accessions",
         "contact": "Data provider contact information",
         "creators": "Dataset creators",
         "dataAndResources": "Data and resources",
@@ -229,4 +230,4 @@
     "startDate": "Experiment start date",
     "endDate": "Experiment end date"
   }
-}
\ No newline at end of file
+}

src/datasets/ui/DisplayPage.tsx

@@ -4,7 +4,7 @@ import { connect } from 'react-redux';
 import { withStyles } from '@material-ui/core/styles';
 import { translate } from 'react-i18next';
 
-import { deleteDataset, publishDataset, rejectDataset, approveDataset } from 'datasets/actions/editor';
+import { rematchDatasetAccessions, deleteDataset, publishDataset, rejectDataset, approveDataset } from 'datasets/actions/editor';
 import {loadMoreAccessions, loadDataset} from 'datasets/actions/public';
 import Dataset from 'model/catalog/Dataset';
 import { AccessionRef } from 'model/accession/AccessionRef';
@@ -34,6 +34,7 @@ interface IDatasetDetailProps extends React.ClassAttributes<any> {
   approveDataset: (dataset: Dataset) => void;
   rejectDataset: (dataset: Dataset, needToRedirect?: boolean) => void;
   loadMoreAccessions: (uuid: string, page?: Page<AccessionRef>) => any;
+  rematchDatasetAccessions: (dataset: Dataset) => void;
   mapLayers: MapLayer[];
 }
 
@@ -66,7 +67,7 @@ class DatasetDetail extends React.Component<IDatasetDetailProps, any> {
   }
 
   public render() {
-    const { t, classes, loading, error, dataset, publishDataset, rejectDataset, approveDataset, deleteDataset, mapLayers } = this.props;
+    const { t, classes, loading, error, dataset, publishDataset, rejectDataset, approveDataset, deleteDataset, rematchDatasetAccessions, mapLayers } = this.props;
 
     return (
       <PageLayout>
@@ -87,6 +88,7 @@ class DatasetDetail extends React.Component<IDatasetDetailProps, any> {
                 approveDataset={ approveDataset }
                 deleteDataset={ deleteDataset }
                 loadAccessions={ this.loadMoreAccessions }
+                rematchDatasetAccessions={ rematchDatasetAccessions }
                 accessionRefs={ this.props.accessionRefs }
                 mapLayers={ mapLayers }
               />
@@ -120,6 +122,7 @@ const mapDispatchToProps = (dispatch) => bindActionCreators({
   rejectDataset,
   approveDataset,
   loadMoreAccessions,
+  rematchDatasetAccessions,
 }, dispatch);
 
 export default translate()(connect(mapStateToProps, mapDispatchToProps)((withStyles as any)(styles)(DatasetDetail)));

src/datasets/ui/c/DatasetDisplay.tsx

@@ -140,6 +140,7 @@ interface IDetailInfoProps extends React.ClassAttributes<any> {
   rejectDataset?: (dataset: Dataset, needToRedirect?: boolean) => void;
   deleteDataset?: (dataset: Dataset) => any;
   loadAccessions: (page: Page<AccessionRef>) => any;
+  rematchDatasetAccessions: (dataset: Dataset) => void;
   accessionRefs: Page<AccessionRef>;
   mapLayers: MapLayer[];
 }
@@ -213,6 +214,14 @@ class DetailInfo extends React.Component<IDetailInfoProps, any> {
     rejectDataset(dataset, true);
   }
 
+  private onRematch = (e) => {
+    e.preventDefault();
+
+    const {rematchDatasetAccessions, dataset} = this.props;
+    log('Rematching Accessions for dataset', dataset);
+    rematchDatasetAccessions(dataset);
+  }
+
   private onDelete = (e) => {
     const { dataset, deleteDataset, t } = this.props;
 
@@ -314,6 +323,11 @@ class DetailInfo extends React.Component<IDetailInfoProps, any> {
                     <Button onClick={ this.onDelete } type="button">{ t('common:action.delete') }</Button>
                   }
                   { dataset._permissions.manage && <Permissions clazz={ Dataset.clazz } id={ dataset.id }/> }
+                  <Authorize role="ROLE_ADMINISTRATOR">
+                    <Button onClick={ this.onRematch } type="button">
+                      { t('datasets.public.c.datasetDisplay.rematch') }
+                    </Button>
+                  </Authorize>
                 </CardActions>
               ) }
             </Card>

src/subsets/actions/public.ts

@@ -22,6 +22,7 @@ import {AccessionRef} from 'model/accession/AccessionRef';
 const apiListSubsets = createApiCaller(SubsetService.list, APPEND_SUBSETS);
 const apiListSubsetAccessions = createApiCaller(SubsetService.listAccessions, APPEND_SUBSET_ACCESSIONS);
 const apiLoadSubset = createApiCaller(SubsetService.get, RECEIVE_SUBSET);
+const apiRematchAccessions = createApiCaller(SubsetService.rematchAccessions, RECEIVE_SUBSET);
 
 export const loadMoreSubsets = (paged: FilteredPage<Subset>) => (dispatch, getState) => {
   return dispatch(apiListSubsets(paged ? paged.filterCode : '', Page.nextPage(paged)))
@@ -50,6 +51,16 @@ export const applyFilters = (filters: string | SubsetFilter, page: IPageRequest
     });
 };
 
+export const rematchSubsetAccessions = (subset: Subset) => {
+  return (dispatch, getState) => {
+    return dispatch(apiRematchAccessions(subset.uuid, subset.version))
+      .then((saved) => {
+        dispatch(loadMoreAccessions(saved.uuid));
+        return saved;
+      });
+  };
+};
+
 export const loadSubset = (uuid: string) => (dispatch) => {
   return dispatch(apiLoadSubset(uuid));
 };

src/subsets/translations.json

@@ -10,7 +10,8 @@
         "source": "Source"
       },
       "subsetDisplay": {
-        "subsetCreators": "Subset creators"
+        "subsetCreators": "Subset creators",
+        "rematch": "Rematch accessions"
       }
     },
     "f": {

src/subsets/ui/DisplayPage.tsx

@@ -3,7 +3,7 @@ import { translate } from 'react-i18next';
 import {connect} from 'react-redux';
 import {bindActionCreators} from 'redux';
 // Actions
-import {loadMoreAccessions, loadSubset} from 'subsets/actions/public';
+import {rematchSubsetAccessions, loadMoreAccessions, loadSubset} from 'subsets/actions/public';
 import {unpublishSubset} from 'subsets/actions/editor';
 import navigateTo from 'actions/navigation';
 // Models
@@ -29,6 +29,7 @@ interface IDisplayPageProps extends React.ClassAttributes<any> {
   navigateTo: any;
   unpublishSubset: (subset: Subset) => void;
   loadMoreAccessions: (uuid: string, page?: Page<AccessionRef>) => any;
+  rematchSubsetAccessions: (subset: Subset) => void;
   accessionRefs: Page<AccessionRef>;
   t: any;
 }
@@ -70,7 +71,7 @@ class DisplayPage extends React.Component<IDisplayPageProps, any> {
   }
 
   public render() {
-    const { error, subset, loading, userRole, t, accessionRefs } = this.props;
+    const { error, subset, loading, userRole, t, accessionRefs, rematchSubsetAccessions } = this.props;
     const isActionsActive: boolean = userRole.findIndex((role) => role === 'ROLE_ADMINISTRATOR') !== -1 || (subset && subset.state === PublishState.REVIEWING);
 
     return (
@@ -92,6 +93,7 @@ class DisplayPage extends React.Component<IDisplayPageProps, any> {
                     subset={ subset }
                     accessions={ accessionRefs }
                     loadAccessions={ this.loadMoreAccessions }
+                    rematchSubsetAccessions={ rematchSubsetAccessions }
                   />
               }
             </div>
@@ -116,6 +118,7 @@ const mapDispatchToProps = (dispatch) => bindActionCreators({
   navigateTo,
   unpublishSubset,
   loadMoreAccessions,
+  rematchSubsetAccessions,
 }, dispatch);
 
 

src/subsets/ui/c/SubsetDisplay.tsx

@@ -19,6 +19,9 @@ import Loading from 'ui/common/Loading';
 import PagedLoader from 'ui/common/PagedLoader';
 import AccessionRefCard from 'accessions/ui/c/AccessionRefCard';
 import DownloadDialog from 'ui/common/download-dialog';
+import ButtonBar from 'ui/common/buttons/ButtonBar';
+import {Button} from '@material-ui/core';
+import Authorize from 'ui/common/authorized/Authorize';
 
 const styles = (theme) => ({
   accessionSection: {
@@ -37,6 +40,7 @@ interface IDetailInfoProps extends React.ClassAttributes<any> {
   unpublishSubset?: (subset: Subset) => any;
   deleteSubset?: (subset: Subset) => any;
   loadAccessions: (page: Page<AccessionRef>) => any;
+  rematchSubsetAccessions: (subset: Subset) => void;
   accessions: Page<AccessionRef>;
   userRoles: string[];
 }
@@ -53,6 +57,13 @@ class DetailInfo extends React.Component<IDetailInfoProps, any> {
     this.setState({authenticated});
   }
 
+  private onRematch = (e) => {
+    e.preventDefault();
+    const {subset, rematchSubsetAccessions} = this.props;
+
+    rematchSubsetAccessions(subset);
+  }
+
   public render() {
     const {classes, subset, t, accessions, loadAccessions} = this.props;
 
@@ -73,11 +84,19 @@ class DetailInfo extends React.Component<IDetailInfoProps, any> {
         <SubsetCard complete subset={ subset }
           actions={
             this.state.authenticated &&
-              <DownloadDialog downloadUrl={ `/proxy/api/v1/subset/${subset.uuid}/download` }
-                slug="download-authenticated"
-                postParams={ { mcpd: 'mcpd' } }
-                buttonTitle={ `${t('common:action.download')} ${t('subsets.public.p.display.MCPD')}` }
-            />
+            <ButtonBar>
+                <DownloadDialog
+                    downloadUrl={ `/proxy/api/v1/subset/${subset.uuid}/download` }
+                    slug="download-authenticated"
+                    postParams={ {mcpd: 'mcpd'} }
+                    buttonTitle={ `${t('common:action.download')} ${t('subsets.public.p.display.MCPD')}` }
+                />
+                <Authorize role="ROLE_ADMINISTRATOR">
+                    <Button onClick={ this.onRematch } type="button">
+                      { t('subsets.public.c.subsetDisplay.rematch') }
+                    </Button>
+                </Authorize>
+            </ButtonBar>
           }
         />
         <Grid container spacing={ 16 } className={ classes.accessionSection } justify={ 'space-between' }>

src/subsets/ui/dashboard/subset-stepper/steps/review/index.tsx

@@ -8,14 +8,17 @@ import StepperTemplate from 'ui/common/stepper/StepperTemplate';
 
 // model
 import Page from 'model/Page';
+import Subset from 'model/subset/Subset';
 import {AccessionRef} from 'model/accession/AccessionRef';
 
 // actions
 import {loadMoreAccessions} from 'subsets/actions/dashboard';
+import {rematchSubsetAccessions} from 'subsets/actions/editor';
 
 interface IReviewAndPublishStepProps extends React.ClassAttributes<any> {
   loadMore: (uuid: string, page?: Page<AccessionRef>) => any;
   accessionRefs: Page<AccessionRef>;
+  rematchSubsetAccessions: (subset: Subset) => void;
   uuid: string;
 }
 
@@ -43,6 +46,7 @@ class ReviewAndPublishStep extends StepperTemplate<IReviewAndPublishStepProps> {
     <SubsetDisplay
       subset={ this.props.item }
       accessions={ this.props.accessionRefs }
+      rematchSubsetAccessions={ this.props.rematchSubsetAccessions }
       loadAccessions={ this.loadMoreAccessions }
     />
   )
@@ -54,6 +58,7 @@ const mapStateToProps = (state, ownProps) => ({
 
 const mapDispatchToProps = (dispatch) => bindActionCreators({
   loadMore: loadMoreAccessions,
+  rematchSubsetAccessions,
 }, dispatch);
 
 export default connect(mapStateToProps, mapDispatchToProps)(ReviewAndPublishStep);