Subsets

- Subsets client services, actions and models
- BrowsePage
- DisplayPage

.gitlab-ci.yml

@@ -16,7 +16,7 @@ stages:
   before_script:
     - npm install
     # Needs to be uncommented if node:version us updated
-    # - npm rebuild node-sass
+    - npm rebuild node-sass
   artifacts:
     name:                 "${CI_PROJECT_NAME}-${CI_COMMIT_REF_NAME}"
     expire_in:            1 day

locales/en/translations.json

@@ -17,7 +17,9 @@
   "label": {
     "crop": "Crop",
     "crop_plural": "Crops",
-    "metadata": "Record metadata"
+    "metadata": "Record metadata",
+    "subset": "Subset",
+    "subset_plural": "Subsets"
   },
   "m": {
     "crop": {
@@ -34,7 +36,8 @@
     "Home": "Home",
     "My Dashboard": "My dashboard",
     "My profile": "My profile",
-    "Partners": "Partners"
+    "Partners": "Partners",
+    "Subsets": "Subsets"
   },
   "p": {
     "crop": {
@@ -109,6 +112,9 @@
         "species": "Species",
         "subtaxa": "Subtaxon"
       }
+    },
+    "subsets": {
+      "title": "Title"
     }
   }
 }

package-lock.json

@@ -17711,6 +17711,11 @@
         "requires-port": "^1.0.0"
       }
     },
+    "url-template": {
+      "version": "2.0.8",
+      "resolved": "https://registry.npmjs.org/url-template/-/url-template-2.0.8.tgz",
+      "integrity": "sha1-/FZaPMy/93MMd19WQflVV5FDnyE="
+    },
     "use": {
       "version": "3.1.1",
       "resolved": "https://registry.npmjs.org/use/-/use-3.1.1.tgz",

package.json

@@ -80,7 +80,8 @@
     "redux-thunk": "^2.3.0",
     "roboto-fontface": "^0.8.0",
     "serialize-javascript": "^1.5.0",
-    "string-natural-compare": "^2.0.2"
+    "string-natural-compare": "^2.0.2",
+    "url-template": "^2.0.8"
   },
   "devDependencies": {
     "@types/react": "^16.4.6",

src/actions/genesys/subsetService.ts

+
+
+import SubsetService from 'service/genesys/SubsetService';
+
+import FilteredPage, { IPageRequest } from 'model/FilteredPage';
+import Subset from 'model/Subset';
+import SubsetFilter from 'model/SubsetFilter';
+
+
+/**
+ * Action addAccessions
+ *
+ * @param UUID UUID
+ * @param version version
+ * @param accessionIds accessionIds
+ */
+export const addAccessions = (UUID: string, version: number, accessionIds: string[]) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.addAccessions(authorization, UUID, version, accessionIds);
+};
+
+/**
+ * Action create
+ *
+ * @param subset subset
+ */
+export const create = (subset: Subset) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.create(authorization, subset);
+};
+
+/**
+ * Action list
+ *
+ * @param filter filter
+ * @param d d
+ * @param l l
+ * @param p p
+ * @param s s
+ */
+export const list = (filter: string | SubsetFilter, page: IPageRequest) => (dispatch, getState): Promise<FilteredPage<Subset>> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.list(authorization, filter, page);
+};
+
+/**
+ * Action removeAccessions
+ *
+ * @param UUID UUID
+ * @param version version
+ * @param accessionsUuids accessionsUuids
+ */
+export const removeAccessions = (UUID: string, version: number, accessionsUuids: string[]) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.removeAccessions(authorization, UUID, version, accessionsUuids);
+};
+
+/**
+ * Action update
+ *
+ * @param subset subset
+ */
+export const update = (subset: Subset) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.update(authorization, subset);
+};
+
+/**
+ * Action get
+ *
+ * @param UUID UUID
+ */
+export const get = (UUID: string) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.get(authorization, UUID);
+};
+
+/**
+ * Action delete
+ *
+ * @param UUID UUID
+ * @param version version
+ */
+export const remove = (UUID: string, version: number) => (dispatch, getState): Promise<Subset> => {
+  const authorization = getState().login.access_token;
+  return SubsetService.remove(authorization, UUID, version);
+};

src/actions/navigation.ts

@@ -4,9 +4,11 @@ import { stringify } from 'query-string';
 export function navigateTo(path: string, query?: object) {
   return (dispatch) => {
       if (! query) {
-        dispatch(push(path));
+        dispatch(push(path ? path : ''));
       } else {
-        dispatch(push(`${path}?` + stringify(query)));
+        dispatch(push(`${path ? path : ''}?` + stringify(query)));
       }
   };
 }
+
+export default navigateTo;

src/actions/subsets.ts

+/**
+ * This is a top-level group for actions in /subsets/* routes.
+ */
+import navigateTo from 'actions/navigation';
+import FilteredPage, { IPageRequest } from 'model/FilteredPage';
+import Subset from 'model/Subset';
+import SubsetFilter from 'model/SubsetFilter';
+
+import { list as listSubsets, get } from 'actions/genesys/subsetService';
+import { RECEIVE_SUBSETS, RECEIVE_SUBSET } from 'constants/subsets';
+
+const receiveSubsets = (paged: FilteredPage<Subset>, error = null) => ({
+  type: RECEIVE_SUBSETS,
+  payload: { paged, error },
+});
+
+const receiveSubset = (subset: Subset, error = null) => ({
+  type: RECEIVE_SUBSET,
+  payload: { subset, error },
+});
+
+export { listSubsets as listSubsetsPromise };
+
+export const updateRoute = (paged: FilteredPage<Subset>) => (dispatch) => {
+  const qs = {
+    f: paged.filterCode || undefined,
+    s: paged.sort[0].property === Subset.DEFAULT_SORT.property ? undefined : paged.sort[0].property,
+    d: paged.sort[0].direction === Subset.DEFAULT_SORT.direction ? undefined : paged.sort[0].direction,
+  };
+  dispatch(navigateTo(null, qs));
+};
+
+export const applyFilters = (filters: string | SubsetFilter, page: IPageRequest = { page: 0 }) => (dispatch) => {
+  console.log('Applying new filter', filters);
+  return dispatch(listSubsets(filters, page))
+    .then((paged) => {
+      dispatch(receiveSubsets(paged));
+      dispatch(updateRoute(paged));
+    }).catch((error) => {
+      console.log(`API response ${error.response.status}`, error.response);
+      dispatch(receiveSubsets(null, error.response));
+    });
+};
+
+export const loadSubsetsPage = (page: IPageRequest) => (dispatch, getState) => {
+  const filterCode = getState().subsets.paged.filterCode;
+  return dispatch(listSubsets(filterCode, page))
+    .then((paged) => {
+      dispatch(receiveSubsets(paged));
+      dispatch(updateRoute(paged));
+    }).catch((error: { response }) => {
+      console.log(`API response ${error.response.status}`, error.response);
+      dispatch(receiveSubsets(null, error.response));
+    });
+};
+
+export const loadSubset = (uuid: string) => (dispatch) => {
+  return dispatch(get(uuid))
+    .then((subset) => {
+      dispatch(receiveSubset(subset));
+    }).catch((error) => {
+      console.log(`API response ${error.response.status}`, error.response);
+      dispatch(receiveSubset(null, error.response));
+    });
+};

src/constants/subsets.ts

+export const RECEIVE_SUBSETS = 'subsets/RECEIVE_SUBSETS';
+export const RECEIVE_SUBSET = 'subsets/RECEIVE_SUBSET';
+
+export const SUBSET_FILTERFORM = 'Form/Subset/SUBSET_FILTERFORM';
+export const SUBSET_FORM = 'Form/Subset/SUBSET_FORM';

src/model/DateFilter.ts

+
+/*
+* Defined in OpenAPI as '#/definitions/DateFilter'
+*/
+class DateFilter {
+  public between: Date[];
+  public ge: Date;
+  public gt: Date;
+  public le: Date;
+  public lt: Date;
+
+
+}
+
+export default DateFilter;

src/model/FilteredPage.ts

+import Page, { IPageRequest } from 'model/Page';
+
+/*
+* Defined in OpenAPI as '#/definitions/Page<T>'
+*/
+class FilteredPage<T> extends Page<T> {
+  filterCode: string;
+  filter: any;
+}
+
+export { FilteredPage as default, IPageRequest };

src/model/Page.ts

+
+
+/*
+* Defined in OpenAPI as '#/definitions/Page<T>'
+*/
+class Page<T> {
+  public content: T[];
+  public first: boolean;
+  public last: boolean;
+  public number: number;
+  public numberOfElements: number;
+  public size: number;
+  public sort: ISort[];
+  public totalElements: number;
+  public totalPages: number;
+
+}
+
+export interface ISort {
+  ascending: boolean;
+  descending: boolean;
+  direction: string;
+  property: string;
+}
+
+export interface IPageRequest {
+  page?: number; // page number
+  size?: number; // page size
+  direction?: string; // direction
+  properties?: string[]; // sort by properties
+}
+
+export default Page;

src/model/StringFilter.ts

+
+/*
+* Defined in OpenAPI as '#/definitions/StringFilter'
+*/
+class StringFilter {
+  public contains: string;
+  public eq: string;
+  public sw: string;
+
+
+}
+
+export default StringFilter;

src/model/Subset.ts

+
+/*
+* Defined in OpenAPI as '#/definitions/Subset'
+*/
+class Subset {
+  public accessionCount: number;
+  public accessionIds: any[];
+  public active: boolean;
+  public createdBy: number;
+  public createdDate: Date;
+  public dateCreated: string;
+  public description: string;
+  public id: number;
+  public lastModifiedBy: number;
+  public lastModifiedDate: Date;
+  public published: boolean;
+  public publisher: string;
+  public rights: string;
+  public title: string;
+  public uuid: string;
+  public version: number;
+  public wiewsCode: string;
+
+  public static DEFAULT_SORT = {
+    property: 'title',
+    direction: 'ASC',
+  };
+  public static SORT_OPTIONS = {
+    title: { label: 'Title', dir: 'ASC' },
+    accessionCount: { label: 'Number of accessions', dir: 'ASC' },
+    publisher: { label: 'Publisher', dir: 'ASC' },
+    lastModifiedDate: { label: 'Last updated', dir: 'DESC' },
+  };
+}
+
+export default Subset;

src/model/SubsetFilter.ts

+import DateFilter from 'model/DateFilter';
+import StringFilter from 'model/StringFilter';
+
+/*
+* Defined in OpenAPI as '#/definitions/SubsetFilter'
+*/
+class SubsetFilter {
+  public active: boolean;
+  public createdBy: number[];
+  public createdDate: DateFilter;
+  public dateCreated: StringFilter;
+  public description: StringFilter;
+  public id: number[];
+  public institutes: string[];
+  public lastModifiedBy: number[];
+  public lastModifiedDate: DateFilter;
+  public published: boolean;
+  public publisher: string[];
+  public rights: string[];
+  public title: StringFilter;
+  public uuid: string[];
+  public version: number[];
+
+
+}
+
+export default SubsetFilter;

src/model/acl.model.ts

@@ -99,3 +99,7 @@ export class SidPermissions extends Permissions {
         return 'org.genesys.blocks.security.serialization.SidPermissions';
     }
 }
+
+export interface IUserPermissions {
+  _permissions: Permissions;
+}

src/model/common.model.ts

-import { fixDate, arraysEqual } from 'utilities';
+import { fixDate } from 'utilities';
 // import * as naturalCompare from 'string-natural-compare';
 
 // Make sure we have compatible reducers
@@ -100,136 +100,3 @@ export abstract class UuidModel extends AuditedVersionedModel {
     super(obj);
   }
 }
-
-export class ClassPK extends BasicModel {
-  public clazz: string = 'org.croptrust.auditlog.model.ClassPK';
-  public classname: string;
-
-  public constructor(obj?) {
-    super(obj);
-  }
-}
-
-/// Sort
-export interface ISort {
-  direction: string;
-  ascending: boolean;
-  property: string;
-}
-
-/// Paginated list
-export class Page<T> {
-  public content: T[];
-  public first: boolean;
-  public last: boolean;
-  public number: number;
-  public numberOfElements: number;
-  public size: number;
-  public totalElements: number;
-  public totalPages: number;
-  public sort?: ISort[];
-  public filter?: object;
-  public filterCode?: string;
-
-  public constructor(obj?, conv?: (o: any) => T) {
-    if (obj !== null && obj !== undefined) {
-      const props = Object.keys(obj);
-      for (const prop of props) { this[prop] = obj[prop]; }
-      if (this.content !== null && this.content && conv !== undefined) {
-        this.content = this.content.map((x) => conv(x));
-      }
-    }
-  }
-
-  public static from(list: object[], total: number = 0, page: number = 0, results: number = 10, sortBy: string = null): Page<object> {
-    if (list === undefined || list === null) {
-      return null;
-    }
-
-    // const items = [ ...list ];
-    // items.sort((a, b) => naturalCompare(a[sortBy], b[sortBy]));
-
-    const startPos: number = page * results;
-    const endPos: number = startPos + results;
-    const content = list.slice(startPos, endPos);
-
-    const x = new Page<object>({
-      size: results,
-      totalElements: total,
-      totalPages: Math.ceil(total / results),
-      number: page,
-      numberOfElements: content.length,
-      first: page === 0,
-      last: total <= endPos,
-      sort: [{ property: sortBy }],
-      content,
-    });
-    // console.log('Done', x);
-    return x;
-  }
-}
-
-export class Pagination<T> extends EmptyModel {
-  public page: number;
-  public size: number;
-  // TODO Should we be using DataOrder (below)?
-  public sort: string[] | string;
-  public dir: string[] | string;
-  public filter: T;
-  public filterCode: string;
-
-  public constructor(obj?) {
-    super(obj);
-  }
-
-  public equals(other: Pagination<T>): boolean {
-    if (other === null) {
-      return false;
-    }
-    if (this.page !== other.page) {
-      return false;
-    }
-    if (this.size !== other.size) {
-      return false;
-    }
-    if (this.filterCode !== other.filterCode) {
-      return false;
-    }
-    if (JSON.stringify(this.sort) !== JSON.stringify(other.sort)) {
-      return false;
-    }
-    return JSON.stringify(this.dir) === JSON.stringify(other.dir);
-  }
-}
-
-export class DataOrder {
-  public direction: string = 'ASC';
-  public sort: string[];
-
-  public constructor(sort: string = '', direction: string = 'ASC') {
-    this.sort = [sort];
-    this.direction = direction;
-  }
-
-  public equals(other: DataOrder): boolean {
-    return other !== null && other !== undefined && other.direction === this.direction && arraysEqual(other.sort, this.sort);
-  }
-}
-
-export class CurrentPermissions extends EmptyModel {
-  public create: boolean;
-  public read: boolean;
-  public write: boolean;
-  public delete: boolean;
-  public manage: boolean;
-
-  public constructor(obj?) {
-    if (obj) {
-      super(obj);
-    }
-  }
-}
-
-export interface IUserPermissions {
-  _permissions: CurrentPermissions;
-}

src/reducers/index.ts

@@ -8,6 +8,7 @@ import history from './history';
 import pageTitle from './pageTitle';
 import snackbar from './snackbar';
 import filterCode from './filterCode';
+import subsets from './subsets';
 
 const rootReducer = combineReducers({
   login,
@@ -19,6 +20,7 @@ const rootReducer = combineReducers({
   filterCode,
   routing: routerReducer,
   form: formReducer,
+  subsets,
 });
 
 export default rootReducer;

src/reducers/subsets.ts

+import update from 'immutability-helper';
+
+import { IReducerAction } from 'model/common.model';
+import { RECEIVE_SUBSETS, RECEIVE_SUBSET } from 'constants/subsets';
+
+import FilteredPage from 'model/FilteredPage';
+import Subset from 'model/Subset';
+
+const INITIAL_STATE: {
+  subset: Subset;
+  subsetError: any;
+  paged: FilteredPage<Subset>;
+  pagedError: any;
+} = {
+  subset: null,
+  subsetError: null,
+  paged: null,
+  pagedError: null,
+};
+
+function subsets(state = INITIAL_STATE, action: IReducerAction) {
+
+  switch (action.type) {
+
+    case RECEIVE_SUBSET: {
+      const { subset, error } = action.payload;
+      return update(state, {
+        subset: { $set: subset },
+        subsetError: { $set: error },
+      });
+    }
+
+    case RECEIVE_SUBSETS: {
+      const { paged, error } = action.payload;
+      return update(state, {
+        paged: { $set: paged },
+        pagedError: { $set: error },
+      });
+    }
+
+    default:
+      return state;
+  }
+}
+
+export default subsets;

src/service/AccessionService.ts

 import authenticatedRequest from 'utilities/requestUtils';
 import * as _ from 'lodash';
 import {API_BASE_URL} from 'constants/apiURLS';
-import {Page} from 'model/common.model';
+import Page from 'model/Page';
 
 export class AccessionService {
 
@@ -15,7 +15,7 @@ export class AccessionService {
       data: {
         ...flatFilters,