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Commit 77b407e2 authored by Matija Obreza's avatar Matija Obreza
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Maven modules (fixes #2)

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/*.csv
/*.kmz
.settings
.classpath
.project
genesys-geotools/target
geotools-cli/target
README.md
View file @ 77b407e2
Geo Tools
=========
# Geo Tools
Executing the default main class without additional arguments renders the program
options:
This is the parent project to :
$ java -jar genesys-geo-tools-0.2-SNAPSHOT.jar
Usage: java -Djava.awt.headless=true -jar genesys-geo-tools-0.2-SNAPSHOT.jar country|landorsea [options] <inputFile> <outputFile>
Options:
<inputFile> File name or - to read CSV from STDIN
<outputFile> File name or - to write CSV to STDOUT
-v Increase log level.
-v Increase log level.
-csv ',"\' Set input CSV separator, quote and escape chars
The program writes log messages to STDERR.
* Library to with [Genesys Geo tools])(genesys-geotools) and
* The command-line interface [CLI](geotools-cli)
## Running LandOrSea ##
Prepare a CSV file with columns `DECLATITUDE`, `DECLONGITUDE`. The
program will test the geographic coordinates against the oceans and water data
and report the result in the column `LANDorSEA_check`.
### Obtaining base data
Download the two "large split polygons" shapefiles in WGS84 projection from:
* http://openstreetmapdata.com/data/land-polygons
* http://openstreetmapdata.com/data/water-polygons
Shapefiles used in this application are derived from OSM data, © OpenStreetMap contributors.
Create a `data` subdirectory in the directory with the jar file.
Extract the shapefile zip archives and move their contents into the newly created `data/` directory.
as the jar file of this application. You should now have three files in this directory:
$ find .
data/land_polygons.shp
data/land...
data/water_polygons.shp
data/water...
genesys-geo-tools-0.2-SNAPSHOT.jar
### Running the program
JAI library creates an AWT window. Run the *Land or Sea* test in headless mode:
java -Djava.awt.headless=true -jar genesys-geo-tools-0.2-SNAPSHOT.jar landorsea [options] <inputFile> <outputFile>
## Validating Country of Origin ##
Prepare a CSV file with columns `DECLATITUDE`, `DECLONGITUDE`. The
program will test the geographic coordinates against the country borders and
report the country ISO3 code in `ORIGCTY_check`.
When the input CSV includes `ORIGCTY`, the program will validate the reported
country against the one identified and report **OK** when they match.
### Country borders
Download two distinct shapefiles with country borders:
* http://thematicmapping.org/downloads/world_borders.php (TM_WORLD_BORDERS-0.3)
* http://gadm.org/version2 (six dissolved layers)
Unpack the zip archives and drop the data into the `data/` folder. The application will load
`TM_WORLD_BORDERS-0.3.shp` and `gadm28_adm0.shp` (the top-admin-level shapefile) and
`gadm28_adm1.shp` (the 2nd-level admin regions shapefile).
The `TM_WORLD_BORDERS` data is used for initial matching. Any mismatch will then be looked up in the
very detailed `GADM0` and `GADM1` layers.
### Running the program
java -Djava.awt.headless=true -jar genesys-geo-tools-0.2-SNAPSHOT.jar country [options] <inputFile> <outputFile>
## Features ##
* Accepts CSV as input, produces CSV output
## TODO List ##
* Generate HTML report
* For "Water" entries, report distance to closest land.
genesys-geotools/LICENSE 0 → 100644
View file @ 77b407e2
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genesys-geotools/pom.xml 0 → 100644
View file @ 77b407e2
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.genesys-pgr</groupId>
<artifactId>geo-tools</artifactId>
<version>0.2-SNAPSHOT</version>
</parent>
<artifactId>genesys-geotools</artifactId>
<name>Genesys Geo Tools library</name>
<licenses>
<license>
<name>The Apache License, Version 2.0</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<organization>
<name>Global Crop Diversity Trust</name>
<url>https://www.croptrust.org</url>
</organization>
<developers>
<developer>
<name>Matija Obreza</name>
<email>matija.obreza@croptrust.org</email>
<organization>Global Crop Diversity Trust</organization>
<organizationUrl>http://www.croptrust.org</organizationUrl>
</developer>
</developers>
<scm>
<connection>https://bitbucket.org/genesys2/genesys-geo-tools.git</connection>
<developerConnection>scm:git:git@bitbucket.org:genesys2/genesys-geo-tools.git</developerConnection>
<url>git@bitbucket.org:genesys2/genesys-geo-tools.git</url>
</scm>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<jdk.target>1.8</jdk.target>
<jdk.source>1.8</jdk.source>
<!-- use the latest snapshot -->
<geotools.version>15-SNAPSHOT</geotools.version>
<jar.mainclass>org.genesys.geotools.cli.CLI</jar.mainclass>
</properties>
<dependencies>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.21</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.3.2</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-shapefile</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-cql</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>org.geotools</groupId>
<artifactId>gt-epsg-wkt</artifactId>
<version>${geotools.version}</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>19.0</version>
</dependency>
<!-- Test dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
</dependencies>
<profiles>
<profile>
<id>normal</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
</profile>
<profile>
<id>release</id>
<activation>
<activeByDefault>false</activeByDefault>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.4</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.3</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.19.1</version>
<configuration>
<forkMode>once</forkMode>
<argLine>-Djava.awt.headless=true</argLine>
<testFailureIgnore>false</testFailureIgnore>
</configuration>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>osgeo</id>
<name>Open Source Geospatial Foundation Repository</name>
<url>http://download.osgeo.org/webdav/geotools/</url>
</repository>
<repository>
<snapshots>
<enabled>true</enabled>
</snapshots>
<id>boundless</id>
<name>Boundless Maven Repository</name>
<url>http://repo.boundlessgeo.com/main</url>
</repository>
<repository>
<snapshots>
<enabled>true</enabled>
</snapshots>
<id>boundless-art</id>
<name>Boundless Artifactory Repository</name>
<url>https://boundless.artifactoryonline.com/boundless/main/</url>
</repository>
</repositories>
</project>
\ No newline at end of file
geotools-cli/LICENSE 0 → 100644
View file @ 77b407e2
Apache License
Version 2.0, January 2004
http://www.apache.org/licenses/
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
1. Definitions.
"License" shall mean the terms and conditions for use, reproduction,
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the copyright owner that is granting the License.
"Legal Entity" shall mean the union of the acting entity and all
other entities that control, are controlled by, or are under common
control with that entity. For the purposes of this definition,
"control" means (i) the power, direct or indirect, to cause the
direction or management of such entity, whether by contract or
otherwise, or (ii) ownership of fifty percent (50%) or more of the
outstanding shares, or (iii) beneficial ownership of such entity.
"You" (or "Your") shall mean an individual or Legal Entity
exercising permissions granted by this License.
"Source" form shall mean the preferred form for making modifications,
including but not limited to software source code, documentation
source, and configuration files.
"Object" form shall mean any form resulting from mechanical
transformation or translation of a Source form, including but
not limited to compiled object code, generated documentation,
and conversions to other media types.
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Object form, made available under the License, as indicated by a
copyright notice that is included in or attached to the work
(an example is provided in the Appendix below).
"Derivative Works" shall mean any work, whether in Source or Object
form, that is based on (or derived from) the Work and for which the
editorial revisions, annotations, elaborations, or other modifications
represent, as a whole, an original work of authorship. For the purposes
of this License, Derivative Works shall not include works that remain
separable from, or merely link (or bind by name) to the interfaces of,
the Work and Derivative Works thereof.
"Contribution" shall mean any work of authorship, including
the original version of the Work and any modifications or additions
to that Work or Derivative Works thereof, that is intentionally
submitted to Licensor for inclusion in the Work by the copyright owner
or by an individual or Legal Entity authorized to submit on behalf of
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copyright license to reproduce, prepare Derivative Works of,
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Work and such Derivative Works in Source or Object form.
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or a Contribution incorporated within the Work constitutes direct
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as of the date such litigation is filed.
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Work or Derivative Works thereof in any medium, with or without
modifications, and in Source or Object form, provided that You
meet the following conditions:
(a) You must give any other recipients of the Work or
Derivative Works a copy of this License; and
(b) You must cause any modified files to carry prominent notices
stating that You changed the files; and
(c) You must retain, in the Source form of any Derivative Works
that You distribute, all copyright, patent, trademark, and
attribution notices from the Source form of the Work,
excluding those notices that do not pertain to any part of
the Derivative Works; and
(d) If the Work includes a "NOTICE" text file as part of its
distribution, then any Derivative Works that You distribute must
include a readable copy of the attribution notices contained
within such NOTICE file, excluding those notices that do not
pertain to any part of the Derivative Works, in at least one
of the following places: within a NOTICE text file distributed
as part of the Derivative Works; within the Source form or
documentation, if provided along with the Derivative Works; or,
within a display generated by the Derivative Works, if and
wherever such third-party notices normally appear. The contents
of the NOTICE file are for informational purposes only and
do not modify the License. You may add Your own attribution
notices within Derivative Works that You distribute, alongside
or as an addendum to the NOTICE text from the Work, provided
that such additional attribution notices cannot be construed
as modifying the License.
You may add Your own copyright statement to Your modifications and
may provide additional or different license terms and conditions
for use, reproduction, or distribution of Your modifications, or
for any such Derivative Works as a whole, provided Your use,
reproduction, and distribution of the Work otherwise complies with
the conditions stated in this License.
5. Submission of Contributions. Unless You explicitly state otherwise,